View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13338_high_3 (Length: 689)

Name: NF13338_high_3
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13338_high_3
NF13338_high_3
[»] chr8 (8 HSPs)
chr8 (17-689)||(7100221-7100895)
chr8 (188-671)||(7086780-7087263)
chr8 (273-663)||(7069799-7070189)
chr8 (347-483)||(7078397-7078533)
chr8 (181-256)||(7078231-7078306)
chr8 (337-490)||(7021085-7021238)
chr8 (387-483)||(7028695-7028791)
chr8 (387-483)||(7035397-7035493)
[»] chr4 (12 HSPs)
chr4 (352-491)||(3953034-3953173)
chr4 (336-468)||(4220718-4220850)
chr4 (352-468)||(3821496-3821612)
chr4 (353-489)||(4003233-4003369)
chr4 (353-468)||(4011712-4011827)
chr4 (337-513)||(3915970-3916146)
chr4 (337-468)||(3811908-3812039)
chr4 (353-468)||(4026469-4026584)
chr4 (374-468)||(4019530-4019624)
chr4 (401-498)||(3988170-3988267)
chr4 (370-442)||(3805802-3805874)
chr4 (405-468)||(3825804-3825867)
[»] chr5 (1 HSPs)
chr5 (352-498)||(13399073-13399219)
[»] chr6 (1 HSPs)
chr6 (418-455)||(12782174-12782211)


Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 17 - 689
Target Start/End: Original strand, 7100221 - 7100895
Alignment:
Q  17 aaattcctcagctatctcatttagtactcatgatacacacttgaaagatttgtttcacatagatggggccacttattatgaattcaacatgaaaagtgaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100221 aaattcctcagctatctcatttagtactcatgatacacacttgaaagatttgtttcacatagatggggccacttattatgaattcaacatgaaaagtgaa 7100320  T
Q  117 acaaataataaggcaaccaaaacctatatatatgtagagcaatccaaagacaatgataaatagagtaaaacaaaacttacaaaaattgtgatgaatgaaa 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100321 acaaataataaggcaaccaaaacctatatacatgtagagcaatccagagacaatgataaatagagtaaaacaaaacttacaaaaattgtgatgaatgaaa 7100420  T
Q  217 gcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgtcatgttcgacaaattcatctgcataagtt 316  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||    
T  7100421 accagagatatctgcagatttcttcaaagcagatctccactgtttcaccctacttgaattgtactttttgtcatgttcaacaaattcatttgcataagtt 7100520  T
Q  317 cccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcat 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |  ||||    
T  7100521 cccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatatgtccatctttctccctacactcaacaattttgactaactcat 7100620  T
Q  417 ccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtgattctgctatttcatcacc 516  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  7100621 ccaaacaccacgacgaagaagcatagttttgagagaatatgaccaaagaaatcaacgatgtttcaatagtttcaagaagtgattgtgctatttcatcacc 7100720  T
Q  517 ttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaaccaaatggctaagaaaaccttcacggatatctagacctctaaag 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7100721 ttttctaagcttattgtctacaaagaaaacaattttctttcgagataaagcttcaaccaaatggctaagaaaaccttcaaggatatctagacctctaaag 7100820  T
Q  617 ctaacaaaaacatcatgcttg--tcactttgaggaacagaacattgaaattccgatgtcaaactgataaacaaga 689  Q
    |||||||| ||||||| ||||  |||| |||||||||| |||||||||||||||||||||||| |||| ||||||    
T  7100821 ctaacaaagacatcatacttgtctcacgttgaggaacaaaacattgaaattccgatgtcaaacagatacacaaga 7100895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 188 - 671
Target Start/End: Original strand, 7086780 - 7087263
Alignment:
Q  188 aaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgt 287  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||||||||| |  |  ||||||||||||  |    
T  7086780 aaaacttacaaaaattgtgatgaatgaaaccctgagatatctgcagatttcttcaaagagcttctccactgtttcaccttgttcaaattgtacttttgtt 7086879  T
Q  288 catgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctc 387  Q
    |||||||  ||||| ||| ||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  7086880 catgttctgcaaatgcatttgcataagtccccttctgatgcctcacaactgtagggtcaactttgtaaaaaacaggcaataaaatctgtccatctttctc 7086979  T
Q  388 tctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagct 487  Q
    |||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||| || |||||  | |||||||||||||||    
T  7086980 tctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaatagct 7087079  T
Q  488 tcaagaagtgattctgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaaccaaatggctaagaa 587  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  7087080 tcaaaaagtgattgtgctatttcatcaccttttctaagcttattgtctacaaagaaaacaatttcctttcgagataaagcttcaaccaaatgactaagaa 7087179  T
Q  588 aaccttcacggatatctagacctctaaagctaacaaaaacatcatgcttgtcactttgaggaacagaacattgaaattccgatg 671  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  7087180 aaccttcacggatgtccagacctctaaagctaacaaagacatcatgcttgtcactttgaggaactgaacattgaaattccgatg 7087263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 273 - 663
Target Start/End: Original strand, 7069799 - 7070189
Alignment:
Q  273 aattgtactttttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaat 372  Q
    ||||||||||||  |||||||| |||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7069799 aattgtacttttgttcatgttcaacaaatgcatctgcataagttccattttgatgcctcacaattgtgggatcaactttgtagaaaacaggcaataaaat 7069898  T
Q  373 ctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaag 472  Q
     | |||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||  |     
T  7069899 gtttccatctttctctctacagtcaacaactttgaccagctcatccaaacaccaagatgaagaagcatagttttgagagaatatgactaatgaaattgaa 7069998  T
Q  473 gatgtttcaatagcttcaagaagtgattctgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaa 572  Q
    ||||||||||| ||||||| |||||| | || ||||||||  |||||| ||||||||| |||||||||| |||||||||||||| |||| | ||||| ||    
T  7069999 gatgtttcaattgcttcaaaaagtgactgtgatatttcatttccttttgtaagcttatagtctacaaagtaaacaattttcttttgagaaaaagctttaa 7070098  T
Q  573 ccaaatggctaagaaaaccttcacggatatctagacctctaaagctaacaaaaacatcatgcttgtcactttgaggaacagaacattgaaa 663  Q
     ||||||   ||||||| |||||||||||||| |||| | |||||||||||| ||||||| ||||| | |||||||||||||| |||||||    
T  7070099 tcaaatgaggaagaaaaacttcacggatatctggaccccgaaagctaacaaagacatcatacttgtgaatttgaggaacagaagattgaaa 7070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 347 - 483
Target Start/End: Original strand, 7078397 - 7078533
Alignment:
Q  347 actttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagtttt 446  Q
    |||| ||||||||| |||| || ||||   |||| ||| |||||||||||||| ||||| ||||| || |||| ||||||| ||||||| ||| |||||     
T  7078397 acttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttg 7078496  T
Q  447 gagagaatatgaccaaagaaatcaaggatgtttcaat 483  Q
    |||||||||| ||||| ||||| || ||| |||||||    
T  7078497 gagagaatataaccaatgaaatgaatgatttttcaat 7078533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 7078231 - 7078306
Alignment:
Q  181 gtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccac 256  Q
    |||||| || |||||| ||||||||||||||| ||| || || |||| |||||||| |||||||||||||||||||    
T  7078231 gtaaaagaacacttacgaaaattgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccac 7078306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 490
Target Start/End: Complemental strand, 7021238 - 7021085
Alignment:
Q  337 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 436  Q
    ||||||||| |||| ||||||||| ||||||| ||||    ||| |||  |||| || ||||| ||||| ||||| |||||||||||||||  |||| |     
T  7021238 tgtaggatctacttggtagaaaactggcaatagaatcctatcatattttgctctgcaatcaactattttcacaagctcatccaaacaccaatgtgaatat 7021139  T
Q  437 gcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttca 490  Q
    | | ||||| |||||||||||||||||  ||| || ||| ||||||| ||||||    
T  7021138 gaaaagtttggagagaatatgaccaaatgaatgaatgatttttcaattgcttca 7021085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 483
Target Start/End: Complemental strand, 7028791 - 7028695
Alignment:
Q  387 ctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaat 483  Q
    |||| ||||| || ||||| ||||| || ||||||||||||  |||||| ||| ||||| |||| ||||||||||| |||||||| ||| |||||||    
T  7028791 ctctgcactcgactattttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaatcaatgatttttcaat 7028695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 483
Target Start/End: Complemental strand, 7035493 - 7035397
Alignment:
Q  387 ctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaat 483  Q
    |||| ||||| || ||||| ||||| |||||||||||||||  |||||| ||| ||||| | || ||||||||||| |||||||| ||| |||||||    
T  7035493 ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatcaatgatttttcaat 7035397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 352 - 491
Target Start/End: Complemental strand, 3953173 - 3953034
Alignment:
Q  352 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 451  Q
    |||||||||||| | || ||||||||||| ||||||||| |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  |||    
T  3953173 gtagaaaacaggtattacaatctgtccatttttctctctgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgag 3953074  T
Q  452 aatatgaccaaagaaatcaaggatgtttcaatagcttcaa 491  Q
    ||||||| ||| ||||| || |||  |||||| |||||||    
T  3953073 aatatgatcaatgaaatgaacgatccttcaattgcttcaa 3953034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 336 - 468
Target Start/End: Original strand, 4220718 - 4220850
Alignment:
Q  336 ttgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaaga 435  Q
    |||||||||| || | |||||||| ||| | || ||  ||||||| ||||||||| |||||||  ||||| |||||||| || |||||||||  ||||||    
T  4220718 ttgtaggatctacctcgtagaaaataggtattacaagttgtccatatttctctctgcactcaattatttttacaagttcttctaaacaccaatgtgaaga 4220817  T
Q  436 agcatagttttgagagaatatgaccaaagaaat 468  Q
    ||||||||||| ||||||||||||||| |||||    
T  4220818 agcatagttttcagagaatatgaccaatgaaat 4220850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 468
Target Start/End: Original strand, 3821496 - 3821612
Alignment:
Q  352 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 451  Q
    |||||||| ||| |||| ||||||||||| ||||||| | ||||| |  ||||| ||||| ||||| |||||||||  |||||||||||||||||  |||    
T  3821496 gtagaaaataggtaatacaatctgtccatatttctctttgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgag 3821595  T
Q  452 aatatgaccaaagaaat 468  Q
    ||||||||||| |||||    
T  3821596 aatatgaccaatgaaat 3821612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 353 - 489
Target Start/End: Original strand, 4003233 - 4003369
Alignment:
Q  353 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 452  Q
    ||||||||||| || | |||| |||||| ||||||| | |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  ||||    
T  4003233 tagaaaacaggtaaaacaatccgtccatatttctctttgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgaga 4003332  T
Q  453 atatgaccaaagaaatcaaggatgtttcaatagcttc 489  Q
    |||||||||| ||||| || |||  |||||| |||||    
T  4003333 atatgaccaatgaaatgaatgatccttcaattgcttc 4003369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 468
Target Start/End: Original strand, 4011712 - 4011827
Alignment:
Q  353 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 452  Q
    ||||||||||| | || ||||||||||| ||||||| | |||||||  |||||  ||||||| || |||||||||  |||| ||||||||||||  ||||    
T  4011712 tagaaaacaggtattacaatctgtccatatttctctttgcactcaattattttcgcaagttcttctaaacaccaatgtgaacaagcatagttttatgaga 4011811  T
Q  453 atatgaccaaagaaat 468  Q
    |||||||||| |||||    
T  4011812 atatgaccaatgaaat 4011827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 337 - 513
Target Start/End: Complemental strand, 3916146 - 3915970
Alignment:
Q  337 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 436  Q
    ||||||||| ||  || |||||||||| | || ||| ||| ||| ||||||| |||||||||| ||||| |||||||| |  |||||||||  |||| ||    
T  3916146 tgtaggatctaccctgaagaaaacaggtattacaatttgtgcatatttctctttacactcaactattttcacaagttcttttaaacaccaatgtgaacaa 3916047  T
Q  437 gcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtgattctgctatttcatc 513  Q
    ||||||||||  |||||||||| ||| ||||| || |||  ||| || ||||||  |||||| |||| ||| |||||    
T  3916046 gcatagttttctgagaatatgatcaatgaaatgaatgatccttcgattgcttcaccaagtgaatctgatatgtcatc 3915970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 468
Target Start/End: Original strand, 3811908 - 3812039
Alignment:
Q  337 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 436  Q
    ||||||||| |||  |||||||| ||| | || ||  ||||||| | ||||| | |||||||  ||||| ||||| ||||| |||||||||  |||||||    
T  3811908 tgtaggatctactccgtagaaaataggtattacaaaatgtccatatgtctctttgcactcaattattttcacaagctcatctaaacaccaatgtgaagaa 3812007  T
Q  437 gcatagttttgagagaatatgaccaaagaaat 468  Q
    ||||||||||  |||||||||||||| |||||    
T  3812008 gcatagttttctgagaatatgaccaatgaaat 3812039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 468
Target Start/End: Original strand, 4026469 - 4026584
Alignment:
Q  353 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 452  Q
    ||||||||||| | || ||||||||||| ||||||| | || ||||  ||||| | |||||| || |||||||||  |||||||||||||||||  ||||    
T  4026469 tagaaaacaggtattacaatctgtccatatttctctttgcaatcaattattttcaaaagttcttctaaacaccaacttgaagaagcatagttttctgaga 4026568  T
Q  453 atatgaccaaagaaat 468  Q
    |||||| ||| |||||    
T  4026569 atatgatcaatgaaat 4026584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 4019530 - 4019624
Alignment:
Q  374 tgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat 468  Q
    ||||||| ||||||||| || | ||  ||| |||||||||| |||||||||||   |||||||||||||| ||| |||||||||| ||| |||||    
T  4019530 tgtccatatttctctctgcattgaagtattgtgacaagttcttccaaacaccagcgtgaagaagcatagtcttgtgagaatatgatcaaggaaat 4019624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 498
Target Start/End: Original strand, 3988170 - 3988267
Alignment:
Q  401 attttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtga 498  Q
    ||||| ||||||||||| |||||||||  |||||||| ||| ||||  |||||||||||||| ||||| || ||   |||||| ||||||| ||||||    
T  3988170 attttcacaagttcatctaaacaccaatgtgaagaagaataattttttgagaatatgaccaatgaaattaacgagccttcaattgcttcaacaagtga 3988267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 3805802 - 3805874
Alignment:
Q  370 aatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatag 442  Q
    ||||||||||| ||||| ||| || | ||  ||| |||||||||| |||||||||||| ||||||||||||||    
T  3805802 aatctgtccatatttctttctgcattgaagtattgtgacaagttcgtccaaacaccaacatgaagaagcatag 3805874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 468
Target Start/End: Original strand, 3825804 - 3825867
Alignment:
Q  405 tgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat 468  Q
    ||||| |||| || ||||||||| ||||||||||||||| ||| |||||||||| ||| |||||    
T  3825804 tgacatgttcttctaaacaccaacatgaagaagcatagtcttgtgagaatatgatcaaggaaat 3825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 352 - 498
Target Start/End: Original strand, 13399073 - 13399219
Alignment:
Q  352 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 451  Q
    |||||||||||| | || ||| ||||||| ||||||| | |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  |||    
T  13399073 gtagaaaacaggtattacaatttgtccatatttctctttgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgag 13399172  T
Q  452 aatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtga 498  Q
    ||||||| ||| ||||| || |||  ||| || ||||||| ||||||    
T  13399173 aatatgatcaatgaaataaatgatccttcgattgcttcaaaaagtga 13399219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 12782174 - 12782211
Alignment:
Q  418 caaacaccaagatgaagaagcatagttttgagagaata 455  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  12782174 caaacaccaagttgaagaagcatagtttttagagaata 12782211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University