View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_1 (Length: 1255)
Name: NF13338_low_1
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 876; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 876; E-Value: 0
Query Start/End: Original strand, 318 - 1250
Target Start/End: Complemental strand, 2627528 - 2626596
Alignment:
| Q |
318 |
atcaaacttgattacacgggcatagatttgtgatattgagtttgaacgagtccacacaatttcaaccaagttttcccaaaattgagtatgtatgtgattc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627528 |
atcaaacttgattacacgggcatagatttgtgatattgagtttgaacgagtccacacaatttcaaccaagttttcccaaaattgagtatgtatgtgattc |
2627429 |
T |
|
| Q |
418 |
aactagattttcctacctagaaacataccacaaacttgtttactagtcctcttgtgagtttgttaaccatgcttgtgatgattatccataatttaaaatg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627428 |
aactagattttcctacctagaaacataccacaaactagtttactagtcctcttgtgagtttgttaaccatgcttgtgatgattatccataatttaaaatg |
2627329 |
T |
|
| Q |
518 |
gaaaaagtattatactatatgatattaatttgtcaatatttaccattttattgacataacgaagcttctatctcattcctatgttgaatagtatcttgat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627328 |
gaaaaagtattatactatatgatattaatttgtcaatatttaccattttattgacataacgaagcttctatctcattcctatgttgaatagtatcttgat |
2627229 |
T |
|
| Q |
618 |
attaaaaaattatggtgtttatcattaggtgataatgtgaaggcgcatcaatgtccctctttgagtcagnnnnnnnttatcactgatgctataagaagat |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
2627228 |
attaaaaaattatggtgtttatcattaggtgataatgtgaaggtgcatcaatgtccctctttgagtcagaaaaaaattaccactgatgctataagaagat |
2627129 |
T |
|
| Q |
718 |
tgaagccaacagttcctgatctggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctga |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627128 |
tgaagccaacagttcctgatctggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctga |
2627029 |
T |
|
| Q |
818 |
actctttatgcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagag |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627028 |
actctttatgcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagag |
2626929 |
T |
|
| Q |
918 |
catggaatggttgatatgtgctttgaaaattgttcaagaatgagtgaagctcatttttctatcgcttccaatttcaagactcatttctctaggttgcctg |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2626928 |
catggaatggttgatatgtgctttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatttcaagactcatttctctagtttgcctg |
2626829 |
T |
|
| Q |
1018 |
acatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgc |
1117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2626828 |
acatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgc |
2626729 |
T |
|
| Q |
1118 |
atacatctcaaaaaataccagacctaggatctcacacatcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcct |
1217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2626728 |
atacatctcaaaaaataccagacctaggatctcaaacatcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcat |
2626629 |
T |
|
| Q |
1218 |
gaaattagcataatcttcactgatgatgtccat |
1250 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |
|
|
| T |
2626628 |
gaaactagcataatcttcactgatgaggtccat |
2626596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 2627827 - 2627573
Alignment:
| Q |
19 |
atcacataaaaaaggcactggtaaagcacaaggatgcagaagaaagatggagggagattattgtcttgcgtagtaatgcagaggtatgttcatgtggtgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627827 |
atcacataaaaaaggcactggtaaagcacaaggatgcagaagaaagatggagggagattattgtcttgcgtagtaatgcagaggtatgttcatgtggtgc |
2627728 |
T |
|
| Q |
119 |
agcagtgtgtcatgagtggacatgattgctcgactggatcatcgctgaaagagtgaacaatactgtcttcacgagttggatgggaatgatggcaggggtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627727 |
agcagtgtgtcatgagtggacatgattgctcgaccggatcatcgctgaaagagtgaacaatactgtcttcacgagttggatgggaatgatggcaggggtg |
2627628 |
T |
|
| Q |
219 |
gtttggttggcagggaagcatttagatggagcaaagaagtagaatcatacggtga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627627 |
gtttggttggcagggaagcatttagatggagcaaagaagtagaatcatacggtga |
2627573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 739 - 1003
Target Start/End: Complemental strand, 2638837 - 2638573
Alignment:
| Q |
739 |
tggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgc |
838 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| ||| |||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2638837 |
tggaaggacattctataccgttgtttcagaataaactttggattattccagaggctccaactacgggtggtaaggctgaactctttatgcattctcctgc |
2638738 |
T |
|
| Q |
839 |
cttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgc |
938 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| ||||| |||||||| ||| |
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|
| T |
2638737 |
cttaagcccattccacatttggggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgc |
2638638 |
T |
|
| Q |
939 |
tttgaaaattgttcaagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
1003 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2638637 |
tttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
2638573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 1005 - 1107
Target Start/End: Complemental strand, 2638526 - 2638424
Alignment:
| Q |
1005 |
tctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaa |
1104 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||| |
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|
| T |
2638526 |
tctaggttgcctgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgttctcaaattcgcagggagcaagaaa |
2638427 |
T |
|
| Q |
1105 |
atg |
1107 |
Q |
| |
|
||| |
|
|
| T |
2638426 |
atg |
2638424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 827 - 933
Target Start/End: Original strand, 44003835 - 44003941
Alignment:
| Q |
827 |
gcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatg |
926 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||| | | || || ||| || ||||| ||||||| ||||| ||| |
|
|
| T |
44003835 |
gcattctcctggcttaagcccattccacatatggggaaagagtctaaagttggaaaggcatagccttcttagattttaaaatttattagatcatggcatg |
44003934 |
T |
|
| Q |
927 |
gttgata |
933 |
Q |
| |
|
||||||| |
|
|
| T |
44003935 |
gttgata |
44003941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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