View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13338_low_10 (Length: 481)

Name: NF13338_low_10
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13338_low_10
NF13338_low_10
[»] chr6 (6 HSPs)
chr6 (1-451)||(26890835-26891285)
chr6 (1-93)||(27713769-27713861)
chr6 (33-87)||(27651844-27651898)
chr6 (30-103)||(26641217-26641290)
chr6 (30-103)||(26747183-26747256)
chr6 (30-99)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-93)||(18083-18175)
[»] chr4 (5 HSPs)
chr4 (163-237)||(5078646-5078720)
chr4 (22-104)||(18682705-18682787)
chr4 (22-72)||(18650319-18650369)
chr4 (22-71)||(18718539-18718588)
chr4 (56-100)||(18692037-18692081)
[»] chr8 (2 HSPs)
chr8 (324-437)||(12072659-12072771)
chr8 (1-93)||(29269635-29269727)
[»] chr2 (1 HSPs)
chr2 (22-78)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 26890835 - 26891285
Alignment:
Q  1 acttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaat 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890835 acttatgtagcagcagcaacacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaat 26890934  T
Q  101 ctctttctggtatgatgatgtgaatgaatgccttttcaccctggacacacgaggctcgactgtttggtgtcccaattcattgacatatatggtgggaaga 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890935 ctctttctggtatgataatgtgaatgaatgccttttcaccctggacacaagaggctcgactgtttggtgtcccaattcattgacatatatggtgggaaga 26891034  T
Q  201 tgtttcaattgtaaggttttaggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891035 tgtttcaattgtaaggttttaggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaaat 26891134  T
Q  301 atcataattgaatgtttatgttaagaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtnnnnnnnn 400  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  26891135 atcataattgaatgtttgtgttaagaaaaatgctatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtaaaaaaaa 26891234  T
Q  401 tctgtacaactaatcaaaacttccccaattcaaaaacctctcatcctgttt 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891235 tctgtacaactaatcaaaacttccccaattcaaaaacctctcatcctgttt 26891285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27713861 - 27713769
Alignment:
Q  1 acttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 93  Q
    |||| |||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  27713861 acttgtgtagcagcaacaacatatgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 27713769  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 27651898 - 27651844
Alignment:
Q  33 gattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagat 87  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  27651898 gattaatttgcttttacgaatacaagagtttgtacatattgcgatactgacagat 27651844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 26641217 - 26641290
Alignment:
Q  30 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 103  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26641217 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26641290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 26747183 - 26747256
Alignment:
Q  30 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 103  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26747183 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26747256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 26828715 - 26828784
Alignment:
Q  30 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa 99  Q
    ||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| |||| |||| ||||||    
T  26828715 tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaa 26828784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 18083 - 18175
Alignment:
Q  1 acttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 93  Q
    |||| |||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  18083 acttgtgtagcagcaacaacatatgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 18175  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 5078646 - 5078720
Alignment:
Q  163 tttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcacaa 237  Q
    |||||||||||||||||||||| | |||||||||||||  | ||||||||||| |||||||||||||||||||||    
T  5078646 tttggtgtcccaattcattgacttctatggtgggaagacatctcaattgtaagtttttaggtgtaaatatcacaa 5078720  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 18682787 - 18682705
Alignment:
Q  22 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctct 104  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||| | |||| || ||||||||| |||||||||||    
T  18682787 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaatctct 18682705  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 18650369 - 18650319
Alignment:
Q  22 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatatt 72  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  18650369 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatatt 18650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 18718588 - 18718539
Alignment:
Q  22 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatat 71  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  18718588 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatat 18718539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 18692081 - 18692037
Alignment:
Q  56 aagagtttgtacatattgtgatactgacagatggttcatcacaat 100  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  18692081 aagagtttgtacatattttcataccgacagatggttcatcacaat 18692037  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 12072659 - 12072771
Alignment:
Q  324 agaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtnnnnnnnntctgtacaactaatcaaaacttc 423  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||        |||| |||| |||| ||| ||||    
T  12072659 agaaaaatgctatttctcgcgacagtttccttcccgagagtgacccgaatgacatgtt-gattacgtgtaaaagacatctggacaaataataaaatcttc 12072757  T
Q  424 cccaattcaaaaac 437  Q
    ||||||||||||||    
T  12072758 cccaattcaaaaac 12072771  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 29269727 - 29269635
Alignment:
Q  1 acttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 93  Q
    |||| |||||||||| ||| | ||||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||| ||| |||| ||||    
T  29269727 acttgtgtagcagcaacaacatatgtatgcatgattaatttgcttttaataatacaagagtatgtagatattgtgataccgactgatgtttca 29269635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 946469 - 946412
Alignment:
Q  22 catgtatgtatgattaatttgcttttaagag-tacaagagtttgtacatattgtgata 78  Q
    ||||||||| ||||||  ||||||||||||| | |||||||||||||||||| |||||    
T  946469 catgtatgtgtgattagattgcttttaagagatgcaagagtttgtacatattttgata 946412  T

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