View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_11 (Length: 470)
Name: NF13338_low_11
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 11132490 - 11132295
Alignment:
| Q |
18 |
taatccagtttctaccgataataactgaaaatatgagaaaaacgagaaattctgaagcatgaatgtatcaatatacaaaaagctaaagaaaaatgcattg |
117 |
Q |
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| T |
11132490 |
taatccagtttctaccgataataactgaaaatatgagaaaaacaagaaattctgaagcatgaatgtatcaatatacaaaaagctaacgaaaaatgcattg |
11132391 |
T |
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| Q |
118 |
attttgttcattgaatagaaaacaaatacgattgaattggtaaaataaaatcacgctaatgagaattggaattcgaaaattgaaaatcgaaagcgt |
213 |
Q |
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| T |
11132390 |
attttgttcattgaatagaaaacaaatacgattgaattggtaaaataaaatcacgctaatgagaattggaattcgaaaattgaaaatcgaaagcgt |
11132295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 11132263 - 11132158
Alignment:
| Q |
235 |
cgatacaagagaagagcttcgaagacgtgtggttaccacatgcacgtgtgtcgagaacgcgatggtttaaagagatgaatcaatgcacgtgcctcttaac |
334 |
Q |
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| T |
11132263 |
cgatacaagagaggagcttcgaagacgtgtggttaccacatgcacgtgtgtcgagaacgcaatggtttaaagagatgaatcaatgcacgtgcctcttaac |
11132164 |
T |
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| Q |
335 |
aaacta |
340 |
Q |
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| T |
11132163 |
aaacta |
11132158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 11132104 - 11132043
Alignment:
| Q |
397 |
aaagaaagtacagggaaatgttaacgaatgttccggtgcacttgttaagaaccattaatatt |
458 |
Q |
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| T |
11132104 |
aaagaaaatacatggaaatgttaacgaatattccggtgcactcattaagaaccgttaatatt |
11132043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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