View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13338_low_12 (Length: 461)

Name: NF13338_low_12
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13338_low_12
NF13338_low_12
[»] scaffold0038 (3 HSPs)
scaffold0038 (129-453)||(35399-35723)
scaffold0038 (127-453)||(43627-43953)
scaffold0038 (131-453)||(28124-28446)
[»] chr6 (31 HSPs)
chr6 (129-453)||(28235237-28235561)
chr6 (129-453)||(28296926-28297250)
chr6 (129-453)||(28514823-28515147)
chr6 (127-453)||(28326148-28326474)
chr6 (127-453)||(28181787-28182114)
chr6 (138-453)||(28503795-28504110)
chr6 (127-453)||(28243465-28243791)
chr6 (131-453)||(28227626-28227948)
chr6 (127-453)||(28186063-28186389)
chr6 (185-401)||(29843225-29843441)
chr6 (185-417)||(29826714-29826946)
chr6 (224-450)||(28140302-28140528)
chr6 (206-352)||(26849461-26849607)
chr6 (192-359)||(26937764-26937931)
chr6 (340-453)||(25483942-25484055)
chr6 (389-453)||(27610306-27610370)
chr6 (389-453)||(27717685-27717749)
chr6 (338-453)||(25539424-25539539)
chr6 (338-453)||(26056803-26056918)
chr6 (237-352)||(26724348-26724463)
chr6 (370-453)||(26884983-26885066)
chr6 (164-444)||(28097638-28097918)
chr6 (338-453)||(25511773-25511888)
chr6 (338-453)||(26076773-26076888)
chr6 (370-453)||(27592207-27592290)
chr6 (370-453)||(27676806-27676889)
chr6 (370-453)||(26656878-26656961)
chr6 (370-453)||(26762849-26762932)
chr6 (370-453)||(28793272-28793355)
chr6 (206-324)||(26975700-26975818)
chr6 (194-270)||(29477437-29477513)
[»] scaffold0019 (1 HSPs)
scaffold0019 (131-453)||(57480-57802)
[»] chr5 (1 HSPs)
chr5 (194-453)||(16691604-16691863)
[»] chr2 (2 HSPs)
chr2 (137-450)||(3280339-3280652)
chr2 (260-319)||(17699899-17699958)
[»] chr4 (5 HSPs)
chr4 (159-451)||(5090138-5090433)
chr4 (370-453)||(18654659-18654742)
chr4 (370-453)||(18678742-18678825)
chr4 (370-453)||(18698582-18698665)
chr4 (370-453)||(18730686-18730769)
[»] chr1 (3 HSPs)
chr1 (225-454)||(28126860-28127089)
chr1 (224-352)||(26136655-26136783)
chr1 (225-285)||(28163729-28163789)
[»] scaffold0349 (1 HSPs)
scaffold0349 (389-453)||(2725-2789)


Alignment Details
Target: scaffold0038 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 129 - 453
Target Start/End: Original strand, 35399 - 35723
Alignment:
Q  129 agtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaac 228  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  35399 agtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaagttcagatgctagggatctatgggactggtggaattggaaagacaac 35498  T
Q  229 acttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatct 328  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||   |    
T  35499 acttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttagagcat 35598  T
Q  329 ctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaaga 428  Q
    ||||| | |||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||  |||||| ||||||||||  ||||||    
T  35599 ctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccgaaaga 35698  T
Q  429 aggttctgttgattcttgatgatgt 453  Q
    |||||||||||||||| ||||||||    
T  35699 aggttctgttgattctagatgatgt 35723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 127 - 453
Target Start/End: Original strand, 43627 - 43953
Alignment:
Q  127 cgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagaca 226  Q
    |||||||||||||||||||||||||  |||| | ||||| ||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  43627 cgagtctagggtcctaaaagtaaataaatttcttgatgtcggatctactggtgtagttcatatgctagggatctatgggactggtggaatgggaaagaca 43726  T
Q  227 acacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaat 326  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  |||| ||||||||||||||| ||||||||||      
T  43727 acacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattcaactaaatatggtttagagc 43826  T
Q  327 ctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaa 426  Q
     |||||| |||||||||||||||||| ||||||||||||||  | |||| |||||| ||||||||||||||||||  |||||| ||||||||||  ||||    
T  43827 atctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgagggaattccaataataaagaaaaggcttcaccgaaa 43926  T
Q  427 gaaggttctgttgattcttgatgatgt 453  Q
     ||||||||| | ||||| ||||||||    
T  43927 caaggttctgctaattctcgatgatgt 43953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 131 - 453
Target Start/End: Original strand, 28124 - 28446
Alignment:
Q  131 tctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaacac 230  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||| |  |||||| |||||||||| |||| | |||||||||||||||||||||    
T  28124 tctagggtcctaaaagtaaattcacttatggatgttggatctaatggtgaagcacagatgatagggatctacgggaatcgtggaatgggaaagacaacac 28223  T
Q  231 ttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatctct 330  Q
    |||| || |||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||| ||||||||| ||||| ||||||||||   |||    
T  28224 ttgcaagggcagtttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagctaaatatggtttagagcatct 28323  T
Q  331 acaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaag 430  Q
    | | | |||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||    ||||| ||||||||||  |||||||     
T  28324 ataggtaaagatcctttccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaagcaaaggcttcaccgaaagaaa 28423  T
Q  431 gttctgttgattcttgatgatgt 453  Q
    ||||| |||||||| ||||||||    
T  28424 gttctattgattctcgatgatgt 28446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 129 - 453
Target Start/End: Original strand, 28235237 - 28235561
Alignment:
Q  129 agtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaac 228  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  28235237 agtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaagttcagatgctagggatctatgggactggtggaattggaaagacaac 28235336  T
Q  229 acttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatct 328  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||   |    
T  28235337 acttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttagagcat 28235436  T
Q  329 ctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaaga 428  Q
    ||||| | |||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||  |||||| ||||||||||  ||||||    
T  28235437 ctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccgaaaga 28235536  T
Q  429 aggttctgttgattcttgatgatgt 453  Q
    |||||||||||||||| ||||||||    
T  28235537 aggttctgttgattctagatgatgt 28235561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 129 - 453
Target Start/End: Complemental strand, 28297250 - 28296926
Alignment:
Q  129 agtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaac 228  Q
    ||||||||||||||||||||||||||||| ||||| |  ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  28297250 agtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtgaagttcagatgctagggatctatgggactggagggatgggaaagacaac 28297151  T
Q  229 acttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatct 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||| ||||| ||||||||||   |    
T  28297150 acttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattcagctaaatatggtttagagcat 28297051  T
Q  329 ctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaaga 428  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||  ||||||    
T  28297050 ctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaacgagggaattccaatcataaagcaaaggcttcaccgaaaga 28296951  T
Q  429 aggttctgttgattcttgatgatgt 453  Q
    ||||| |||||||||| ||||||||    
T  28296950 aggttttgttgattctagatgatgt 28296926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 129 - 453
Target Start/End: Original strand, 28514823 - 28515147
Alignment:
Q  129 agtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaac 228  Q
    ||||||||||||||||||||||||||||| ||||| |  ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  28514823 agtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtgaagttcagatgctagggatctatgggactggagggatgggaaagacaac 28514922  T
Q  229 acttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatct 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||| ||||| ||||||||||   |    
T  28514923 acttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattcagctaaatatggtttagagcat 28515022  T
Q  329 ctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaaga 428  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||  ||||||    
T  28515023 ctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaacgagggaattccaatcataaagcaaaggcttcaccgaaaga 28515122  T
Q  429 aggttctgttgattcttgatgatgt 453  Q
    ||||| |||||||||| ||||||||    
T  28515123 aggttttgttgattctagatgatgt 28515147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 127 - 453
Target Start/End: Original strand, 28326148 - 28326474
Alignment:
Q  127 cgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagaca 226  Q
    |||||||||| ||||| ||||||||||| || | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  28326148 cgagtctaggatcctagaagtaaattcacttatagatgttggatctaatggtaaagttcagatgctagggatctatgggactggtggaatgggaaagaca 28326247  T
Q  227 acacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaat 326  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||| ||||| ||||||||||      
T  28326248 acacttgcaagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattcagctaaatatggtttagagc 28326347  T
Q  327 ctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaa 426  Q
     |||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||| || ||| ||||||  |||||| ||||||||||  ||||    
T  28326348 atctacaggaaaagctcctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcataaagcaaaggcttcaccgaaa 28326447  T
Q  427 gaaggttctgttgattcttgatgatgt 453  Q
    |||||||||||||||||| ||||||||    
T  28326448 gaaggttctgttgattctcgatgatgt 28326474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 127 - 453
Target Start/End: Original strand, 28181787 - 28182114
Alignment:
Q  127 cgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagaca 226  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||     
T  28181787 cgagtctagggtcctaaaagtaaattcatttctggatgtcggatctaatggtgaagttcagatgctagggatctatgggactggaggaatgggaaagacg 28181886  T
Q  227 acacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaat 326  Q
    || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | ||||||| ||||| ||||||||||      
T  28181887 acgcttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttaacgacataagggcaaattcagctaaatatggtttagagc 28181986  T
Q  327 ctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagat-aaaggaaaggcttcagagaa 425  Q
     |||||| ||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||  || |||| ||||||||||  |||    
T  28181987 atctacaggaaaatctcctttccaaattagctgaattggacgttaagttaggagatgtcaacgagggaactccaatcataaaagcaaaggcttcaccgaa 28182086  T
Q  426 agaaggttctgttgattcttgatgatgt 453  Q
    |||||||||| |||||||| ||||||||    
T  28182087 agaaggttctattgattctagatgatgt 28182114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 138 - 453
Target Start/End: Original strand, 28503795 - 28504110
Alignment:
Q  138 tcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaacacttgccag 237  Q
    ||||| ||||||||||| || | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28503795 tcctagaagtaaattcacttatagatgttggatctaatggtaaagttcagatgctagggatctatgggactggtggaatgggaaagacaacacttgcaag 28503894  T
Q  238 agcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatctctacaagaa 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||| ||||| ||||||||||   |||||| |||    
T  28503895 agcagtttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattcagctaaatatggtttagagcatctacaggaa 28503994  T
Q  338 aagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgt 437  Q
    ||||||||||||||| ||||||||||| ||| |||||||||||||||||| || ||| ||||||  |||||| ||||||||||  |||||||||||||||    
T  28503995 aagctcctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcataaagcaaaggcttcaccgaaagaaggttctgt 28504094  T
Q  438 tgattcttgatgatgt 453  Q
    ||||||| ||||||||    
T  28504095 tgattctcgatgatgt 28504110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 127 - 453
Target Start/End: Original strand, 28243465 - 28243791
Alignment:
Q  127 cgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagaca 226  Q
    |||||||||||||||||||||||||  |||| | ||||| ||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  28243465 cgagtctagggtcctaaaagtaaataaatttcttgatgtcggatctactggtgtagttcatatgctagggatctatgggactggtggaatgggaaagaca 28243564  T
Q  227 acacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaat 326  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  |||| ||||||||||||||| ||||||||||      
T  28243565 acacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattcaactaaatatggtttagagc 28243664  T
Q  327 ctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaa 426  Q
     |||||| |||||||||||||||||| ||||||||||||||  | |||| |||||| ||||||||||||||||||  |||||| ||||||||||  ||||    
T  28243665 atctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgagggaattccaataataaagaaaaggcttcaccgaaa 28243764  T
Q  427 gaaggttctgttgattcttgatgatgt 453  Q
     ||||||||| | ||||| ||||||||    
T  28243765 caaggttctgctaattctcgatgatgt 28243791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 131 - 453
Target Start/End: Original strand, 28227626 - 28227948
Alignment:
Q  131 tctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaacac 230  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||| |  |||||| |||||||||| |||| | |||||||||||||||||||||    
T  28227626 tctagggtcctaaaagtaaattcacttatggatgttggatctaatggtgaagcacagatgatagggatctacgggaatcgtggaatgggaaagacaacac 28227725  T
Q  231 ttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatctct 330  Q
    |||| || |||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||| ||||||||| ||||| ||||||||||   |||    
T  28227726 ttgcaagggcagtttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagctaaatatggtttagagcatct 28227825  T
Q  331 acaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaag 430  Q
    | | | |||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||    ||||| ||||||||||  |||||||     
T  28227826 ataggtaaagatcctttccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaagcaaaggcttcaccgaaagaaa 28227925  T
Q  431 gttctgttgattcttgatgatgt 453  Q
    ||||| |||||||| ||||||||    
T  28227926 gttctattgattctcgatgatgt 28227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 127 - 453
Target Start/End: Original strand, 28186063 - 28186389
Alignment:
Q  127 cgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagaca 226  Q
    |||||||||||| ||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||     
T  28186063 cgagtctagggttctaaaagtaaattcacttatggattttggatctaatggtgaagttcagatgctagggatctatgggcctggaggaatgggaaagacg 28186162  T
Q  227 acacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaat 326  Q
    |||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||  |||| | ||||||| ||||| ||||||| ||      
T  28186163 acacttgcaagagcagtttataattccctagctgatcaatttgatgatttgtgttttcttcacgatgtaaggggaaattcagctaaatatggtttggagc 28186262  T
Q  327 ctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaa 426  Q
     ||| || | |||||||||||| ||| ||||  || |||||  |||||||||||||||| |||||||||||||||  ||| || ||||||||||   |||    
T  28186263 atctgcagggaaagctcctttctaaattagtcaaactggacattaagttaggagatgtctacgagggaattccaatcatagagaaaaggcttcaccaaaa 28186362  T
Q  427 gaaggttctgttgattcttgatgatgt 453  Q
    ||||||| |||||||||| ||||||||    
T  28186363 gaaggttttgttgattctcgatgatgt 28186389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 401
Target Start/End: Complemental strand, 29843441 - 29843225
Alignment:
Q  185 cagatgctagggatctatgggactggtggaatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttc 284  Q
    |||||| | ||||| ||||| | ||||||| |||| || |||||||||||  ||||| |||||||||  || || ||| |||||||  ||||||||||||    
T  29843441 cagatggtggggatttatggaattggtggattgggtaaaacaacacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttttc 29843342  T
Q  285 ttcacgacataagagaaaattcaactaaacatggtttagaatctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgt 384  Q
    ||||||||   ||||||| |||| |||||||||| |||||   ||| ||||| ||||| |||||||||| |||||| ||||||  |||| ||||||||||    
T  29843341 ttcacgacgggagagaaagttcagctaaacatggcttagagcatctccaagagaagcttctttccaaaacagttgatttggacattaagctaggagatgt 29843242  T
Q  385 caacgagggaattccaa 401  Q
     || || ||||||||||    
T  29843241 taatgaaggaattccaa 29843225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 185 - 417
Target Start/End: Original strand, 29826714 - 29826946
Alignment:
Q  185 cagatgctagggatctatgggactggtggaatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttc 284  Q
    |||||| | ||||| ||||| | ||| ||| |||| || |||||||||||  ||||| ||||||||   || |  ||| |||||||  | ||||||||||    
T  29826714 cagatggtggggatttatggaattggcggattgggtaaaacaacacttgctcgagcaatttataatatgattggtgataaatttgaatgcttgtgttttc 29826813  T
Q  285 ttcacgacataagagaaaattcaactaaacatggtttagaatctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgt 384  Q
    |||| ||| | ||||||| |||| |||||||||| ||||||  ||| ||| | ||||| |||||||||| |||||||||||||  |||| ||||||||||    
T  29826814 ttcatgacttgagagaaagttcagctaaacatggcttagaacatctccaacagaagcttctttccaaaacagttgaattggacactaagctaggagatgt 29826913  T
Q  385 caacgagggaattccaaagataaaggaaaggct 417  Q
     ||||| ||||||||||  |||||| |||||||    
T  29826914 taacgaaggaattccaataataaagcaaaggct 29826946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 224 - 450
Target Start/End: Original strand, 28140302 - 28140528
Alignment:
Q  224 acaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttag 323  Q
    |||||||||||   |||| |||||||||  || ||||||||||||||  ||||||||||||||||  |  | ||||||| |||| |||||||||| ||||    
T  28140302 acaacacttgcacaagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtgagagaaatttcagctaaacatggcttag 28140401  T
Q  324 aatctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagag 423  Q
    ||  ||| |||||||| |||||||| |||| |||||  |||  || |||||| ||| |||| |  || ||||| ||||  |||||||||||||| |        
T  28140402 aagatctccaagaaaaactcctttctaaaacagttggtttgagcgttaagtttggacatgtaagtgaaggaataccaataataaaggaaaggctacgact 28140501  T
Q  424 aaagaaggttctgttgattcttgatga 450  Q
    |||||||||||| |||||||| |||||    
T  28140502 aaagaaggttcttttgattctcgatga 28140528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 352
Target Start/End: Original strand, 26849461 - 26849607
Alignment:
Q  206 actggtggaatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaatt 305  Q
    ||||| ||||||||||| |||||||||||   ||||||||||||||| || || |||||||||||  ||  |||||| ||||||||  | ||||||||||    
T  26849461 actggaggaatgggaaaaacaacacttgctcaagcagtttataattcgattgctgatcaatttgaatgtaagtgtttccttcacgatgtgagagaaaatt 26849560  T
Q  306 caactaaacatggtttagaatctctacaagaaaagctcctttccaaa 352  Q
    ||  ||||||||| ||||| | ||| |||||  ||||||| ||||||    
T  26849561 cacttaaacatggcttagagtttctccaagagcagctcctctccaaa 26849607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 359
Target Start/End: Original strand, 26937764 - 26937931
Alignment:
Q  192 tagggatctatgggactggtggaatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacga 291  Q
    ||||||||||||||| ||| ||||| || ||  ||||||||||  ||||| |||||||||  || |  |||||||||||  ||||||||||||||||  |    
T  26937764 tagggatctatgggattggcggaattggtaaatcaacacttgcacgagcaatttataatttgattggtgatcaatttgaaagtttgtgttttcttcataa 26937863  T
Q  292 cataagagaaaattcaactaaacatggtttagaatctctacaagaaaagctcctttccaaaatagttg 359  Q
      || |||||||| ||||||||||||||||| ||   || || || |||||||||||| ||| |||||    
T  26937864 tgtacgagaaaatgcaactaaacatggtttacaaaacctccaggagaagctcctttccgaaacagttg 26937931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 453
Target Start/End: Original strand, 25483942 - 25484055
Alignment:
Q  340 gctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttg 439  Q
    ||||||||| ||||||||| |||| ||||||||||||| |||||| |  |||||||| ||||  ||||||||||| ||    ||||||||| |||| |||    
T  25483942 gctcctttcaaaaatagttaaatttgacggtaagttagaagatgttagtgagggaataccaatcataaaggaaagactatctagaaagaagattcttttg 25484041  T
Q  440 attcttgatgatgt 453  Q
    ||| ||||||||||    
T  25484042 attgttgatgatgt 25484055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 27610370 - 27610306
Alignment:
Q  389 gagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    |||||||||||  | |||||||||||||| || |||||||||||||| |||||||||||||||||    
T  27610370 gagggaattccttatataaaggaaaggctacatagaaagaaggttcttttgattcttgatgatgt 27610306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 27717749 - 27717685
Alignment:
Q  389 gagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    |||||||||||  | |||||||||||||| || |||||||||||||| |||||||||||||||||    
T  27717749 gagggaattccttatataaaggaaaggctacatagaaagaaggttcttttgattcttgatgatgt 27717685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 25539424 - 25539539
Alignment:
Q  338 aagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgt 437  Q
    ||||||||||| ||||||||| |||| ||||||||||||| |||||| |  ||||||||  |||  ||||||||||| ||    | ||||||| |||| |    
T  25539424 aagctcctttcaaaaatagttaaatttgacggtaagttagaagatgttagtgagggaataacaatcataaaggaaagactatctaaaaagaagattcttt 25539523  T
Q  438 tgattcttgatgatgt 453  Q
    ||||||||||||||||    
T  25539524 tgattcttgatgatgt 25539539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 26056803 - 26056918
Alignment:
Q  338 aagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgt 437  Q
    ||||||||||| ||||||||| |||| |||||| |||||| |||||| |  |||||||| ||||  ||||||||||| ||    ||||||||| |||| |    
T  26056803 aagctcctttcaaaaatagttaaatttgacggtcagttagaagatgttagtgagggaataccaattataaaggaaagactatctagaaagaagattcttt 26056902  T
Q  438 tgattcttgatgatgt 453  Q
    |||||||||| |||||    
T  26056903 tgattcttgacgatgt 26056918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 26724348 - 26724463
Alignment:
Q  237 gagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatctctacaaga 336  Q
    ||||||||||| |||  || || ||||||||||| || |||||||| |||||| |  | ||||||||||||| |||| |||| ||||||| ||| |||||    
T  26724348 gagcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaaattcaattaaatatggcttagaatatctccaaga 26724447  T
Q  337 aaagctcctttccaaa 352  Q
     |||||||| ||||||    
T  26724448 gaagctcctctccaaa 26724463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 453
Target Start/End: Original strand, 26884983 - 26885066
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||||||| |  ||||||||||||   ||||||||||| || || ||||||||| |||| |||||||||||||||||    
T  26884983 taagttaggagatgttagtgagggaattccactcataaaggaaagactacatagaaagaagattcttttgattcttgatgatgt 26885066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 444
Target Start/End: Complemental strand, 28097918 - 28097638
Alignment:
Q  164 gttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaacacttgccagagcagtttataattccatagccgatc 263  Q
    ||||||||||||| | | ||  ||||||| |||||||||||  | || || || || |||||||||||||| | ||| |||||||||| ||| || | ||    
T  28097918 gttggatctaatgataaagtcaagatgcttgggatctatggaccaggagggataggtaagacaacacttgcaaaagcggtttataatttcattgctggtc 28097819  T
Q  264 aatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatctctacaagaaaagctcctttccaaaatagttgaatt 363  Q
    |||||||  || | ||||| |||||| |  | |||||||||||| | |||||||| |||||   ||| ||| || |  | |||||||| || |||| |||    
T  28097818 aatttgaatgtgtctgtttccttcacaatgtgagagaaaattcagcaaaacatggcttagagcatctccaaaaagatttgctttccaagattgttggatt 28097719  T
Q  364 ggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattct 444  Q
    ||||  |||||||| ||||   |  |||||||||||||  |||||  ||||||| ||   |||||||||||| ||||||||    
T  28097718 ggacattaagttagcagatactagtgagggaattccaatcataaaacaaaggctacaacaaaagaaggttctattgattct 28097638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 25511773 - 25511888
Alignment:
Q  338 aagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgt 437  Q
    ||||||||||| ||||||||| |||| |||||| || ||| |||||| |  |||||||| ||||  ||||||||||| ||    ||||||||| |||| |    
T  25511773 aagctcctttcaaaaatagttaaatttgacggtcagatagaagatgttagtgagggaataccaattataaaggaaagactatctagaaagaagattcttt 25511872  T
Q  438 tgattcttgatgatgt 453  Q
    |||||||||| |||||    
T  25511873 tgattcttgacgatgt 25511888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 26076773 - 26076888
Alignment:
Q  338 aagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgt 437  Q
    ||||||||||| ||||||||| |||| |||||| || ||| |||||| |  |||||||| ||||  ||||||||||| ||    ||||||||| |||| |    
T  26076773 aagctcctttcaaaaatagttaaatttgacggtcagatagaagatgttagtgagggaataccaattataaaggaaagactatctagaaagaagattcttt 26076872  T
Q  438 tgattcttgatgatgt 453  Q
    |||||||||| |||||    
T  26076873 tgattcttgacgatgt 26076888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 27592290 - 27592207
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||  ||| | ||| |||||||| || |||||||||||||| ||  |||||||| |||| |||||||||||||||||    
T  27592290 taagttaggaagtgttagcgaaggaattcctaaaataaaggaaaggctacatggaaagaagattcttttgattcttgatgatgt 27592207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 27676889 - 27676806
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||  ||| | ||| |||||||| || |||||||||||||| ||  |||||||| |||| |||||||||||||||||    
T  27676889 taagttaggaagtgttagcgaaggaattcctaaaataaaggaaaggctacatggaaagaagattcttttgattcttgatgatgt 27676806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 453
Target Start/End: Original strand, 26656878 - 26656961
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||||||| |  |||||||||||||  ||||||||||| ||    ||||||||| |||| |||||||| ||||||||    
T  26656878 taagttaggagatgttagtgagggaattccaatcataaaggaaagactatctagaaagaagattcttttgattctcgatgatgt 26656961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 453
Target Start/End: Original strand, 26762849 - 26762932
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||||||| |  |||||||||||||  ||||||||||| ||    ||||||||| |||| |||||||| ||||||||    
T  26762849 taagttaggagatgttagtgagggaattccaatcataaaggaaagactatctagaaagaagattcttttgattctcgatgatgt 26762932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 453
Target Start/End: Original strand, 28793272 - 28793355
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||| ||| |  |||||||||||  | |||||||||||||| || | ||||||| |||| |||||||| ||||||||    
T  28793272 taagttaggaggtgttagtgagggaattccttatataaaggaaaggctacatacaaagaagattcttttgattctcgatgatgt 28793355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 324
Target Start/End: Original strand, 26975700 - 26975818
Alignment:
Q  206 actggtggaatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaatt 305  Q
    ||||| |||||||| ||||||||||||||   ||||||||||||||  || ||  ||||||||||  ||   ||||| ||||||||  | ||||||||||    
T  26975700 actgggggaatgggtaagacaacacttgctcaagcagtttataatttgattgctaatcaatttgaatgtaactgtttccttcacgatgtgagagaaaatt 26975799  T
Q  306 caactaaacatggtttaga 324  Q
    ||  ||||||||| |||||    
T  26975800 cagttaaacatggcttaga 26975818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 29477513 - 29477437
Alignment:
Q  194 gggatctatgggactggtggaatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttga 270  Q
    ||||||||||||| ||| ||||| || || |||||||||||  |||||||||||||| | ||  | |||||||||||    
T  29477513 gggatctatgggattggcggaatagggaaaacaacacttgctcgagcagtttataatacgatttcggatcaatttga 29477437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 131 - 453
Target Start/End: Complemental strand, 57802 - 57480
Alignment:
Q  131 tctagggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaacac 230  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||| || | ||| |||||||||||||||||||    
T  57802 tctagggtcctaaaagtaaattcacttctggatgttagatctaatggtgaagttcagatgctagggatctacggaattggaggaatgggaaagacaacac 57703  T
Q  231 ttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatctct 330  Q
    |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| ||||||||||   |||    
T  57702 ttgctagagcagtttttaattccatagccgatcaatttgatgatttgtgttttcttcacgacgtaagggaaaattcagctaaatatggtttagagcatct 57603  T
Q  331 acaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaag 430  Q
     || | ||| || ||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||  |||||| ||||||||||  ||||||||    
T  57602 gcagggaaaacttctttccaaattagttgaattggacattaagttagtagatgtcaacgagggaattccaatcataaagcaaaggcttcaccgaaagaag 57503  T
Q  431 gttctgttgattcttgatgatgt 453  Q
    ||| |||||||||| ||||||||    
T  57502 gttttgttgattctcgatgatgt 57480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 453
Target Start/End: Original strand, 16691604 - 16691863
Alignment:
Q  194 gggatctatgggactggtggaatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgaca 293  Q
    |||||| |||| | ||| ||||| || || |||||||||||  ||||| |||||||||  || || |||||||||||  |||||||||||||||| |||     
T  16691604 gggatccatggaattggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacg 16691703  T
Q  294 taagagaaaattcaactaaacatggtttagaatctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgaggg 393  Q
    | |||||||||||| |||||||||| ||||||  ||| ||||||| ||||||||||||||   ||| ||| |||  |||||||||| |||| |  || ||    
T  16691704 tgagagaaaattcatctaaacatggcttagaacatcttcaagaaaggctcctttccaaaaccattggattagacattaagttaggacatgttagtgaagg 16691803  T
Q  394 aattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||  |||||  ||||||| ||   ||| |||||||| |||||||| ||||||||    
T  16691804 aattccaataataaaacaaaggctacaacaaaaaaaggttcttttgattctcgatgatgt 16691863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 137 - 450
Target Start/End: Original strand, 3280339 - 3280652
Alignment:
Q  137 gtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaacacttgcca 236  Q
    ||||| |||||||||||| || | || |||| |||||||  ||| ||  ||||| |||| ||||||||   ||| |||||||| |||||||| ||||| |    
T  3280339 gtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttgcaa 3280438  T
Q  237 gagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttagaatctctacaaga 336  Q
    ||||||||||||||| ||| ||  ||||||||||  || | |||||||||||| |  | |||||||||||| | ||||||||| ||||   ||| ||| |    
T  3280439 gagcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaa 3280538  T
Q  337 aaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctg 436  Q
      |  | ||||||||||  |||| |||||||  |||||||||||||   |  |||||||||||||  |||||| ||||||| ||  | || ||||||||     
T  3280539 ggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccggaaaaaggttcta 3280638  T
Q  437 ttgattcttgatga 450  Q
    ||| ||||||||||    
T  3280639 ttggttcttgatga 3280652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 17699899 - 17699958
Alignment:
Q  260 gatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggt 319  Q
    ||||||||||||||| ||||||||||| | || |||||||||||| ||| ||| ||||||    
T  17699899 gatcaatttgatggtgtgtgttttcttgatgatataagagaaaatgcaattaaccatggt 17699958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 451
Target Start/End: Complemental strand, 5090433 - 5090138
Alignment:
Q  159 tggatgttggatctaatggtgatgttcagatgctagggatctatgggactggtggaatgggaaagacaacacttgccagagcagtttataattccatagc 258  Q
    ||||| |||| ||||||| | | || || ||||||||||||||||||||||| |||||||| || || |||||||  | |||| |||| |||| ||| ||    
T  5090433 tggatattggttctaatgataaagtccaaatgctagggatctatgggactggaggaatgggtaaaaccacacttggaaaagcaatttacaatttcattgc 5090334  T
Q  259 cgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaa---catggtttagaatctctacaagaaaagctcctttccaaaata 355  Q
      ||||||||||  || | |||||||||| | |  | ||||||||||||||||||    |||||||||| | ||| ||    ||| ||||||  |||| |    
T  5090333 tcatcaatttgaatgtctttgttttcttcccaatgtgagagaaaattcaactaaagtggatggtttagagtatcttcagagtaaggtcctttttaaaaca 5090234  T
Q  356 gttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgat 451  Q
     ||| ||||||   || ||| |||||| |||  |||||||||||||  |||||| ||||||| || |||||||| ||||| |||||||| ||||||    
T  5090233 attggattggaaattaggtttggagatatcagtgagggaattccaatcataaagaaaaggctacaaagaaagaaagttcttttgattctcgatgat 5090138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 18654742 - 18654659
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||| ||| |  |||||||||||  | |||||||||||||| || | ||||||| |||| |||||||| ||||||||    
T  18654742 taagttaggaggtgttagtgagggaattccttatataaaggaaaggctacatacaaagaagattcttttgattctcgatgatgt 18654659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 18678825 - 18678742
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||| ||| |  |||||||||||  | |||||||||||||| || | ||||||| |||| |||||||| ||||||||    
T  18678825 taagttaggaggtgttagtgagggaattccttatataaaggaaaggctacatacaaagaagattcttttgattctcgatgatgt 18678742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 18698665 - 18698582
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||| ||| |  |||||||||||  | |||||||||||||| || | ||||||| |||| |||||||| ||||||||    
T  18698665 taagttaggaggtgttagtgagggaattccttatataaaggaaaggctgcatacaaagaagattcttttgattctcgatgatgt 18698582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 18730769 - 18730686
Alignment:
Q  370 taagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    ||||||||||| ||| |  |||||||||||  | |||||||||||||| || | ||||||| |||| |||||||| ||||||||    
T  18730769 taagttaggaggtgttagtgagggaattccctatataaaggaaaggctacatacaaagaagattcttttgattctcgatgatgt 18730686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 454
Target Start/End: Complemental strand, 28127089 - 28126860
Alignment:
Q  225 caacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttaga 324  Q
    |||||||||| | |||| ||||||||| ||| || ||||||||||| ||||| ||||||||  | ||  | ||||| | |||||||  | ||  |||  |    
T  28127089 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtgagagagatttcaactccatataatttgaa 28126990  T
Q  325 atctctacaagaaaagctcctttccaaaatagttgaattggacggtaagttaggagatgtcaacgagggaattccaaagataaaggaaaggcttcagaga 424  Q
    |  ||| ||||||||||||||||  |||| ||||| |||||||  ||||||||||| ||| |  ||||||||| |||  |||||  |||||||    |||    
T  28126989 acatctccaagaaaagctccttttgaaaacagttggattggacattaagttaggaggtgttagtgagggaattgcaatcataaaacaaaggctatgcaga 28126890  T
Q  425 aagaaggttctgttgattcttgatgatgtc 454  Q
    |||||| |||| ||||||||||||||||||    
T  28126889 aagaagattcttttgattcttgatgatgtc 28126860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 352
Target Start/End: Original strand, 26136655 - 26136783
Alignment:
Q  224 acaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacgacataagagaaaattcaactaaacatggtttag 323  Q
    ||||||||| |  |||||||||||||||  || || ||||||||||| || ||||| || |||||| |  |  |||||||||||  |||| |||| ||||    
T  26136655 acaacacttactcgagcagtttataatttgattgcggatcaatttgaaggattgtgcttccttcacaatgtgcgagaaaattcagttaaatatggcttag 26136754  T
Q  324 aatctctacaagaaaagctcctttccaaa 352  Q
    ||| ||| |||||  ||||||| ||||||    
T  26136755 aatatctccaagagcagctcctctccaaa 26136783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 28163789 - 28163729
Alignment:
Q  225 caacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttct 285  Q
    |||||||||| | |||| ||||||||| ||| || ||||||||||| ||||| ||||||||    
T  28163789 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttct 28163729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 2789 - 2725
Alignment:
Q  389 gagggaattccaaagataaaggaaaggcttcagagaaagaaggttctgttgattcttgatgatgt 453  Q
    |||||||||||  | |||||||||||||| || |||||||||||||| |||||||||||||||||    
T  2789 gagggaattccttatataaaggaaaggctacatagaaagaaggttcttttgattcttgatgatgt 2725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University