View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13338_low_13 (Length: 461)
Name: NF13338_low_13
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 11842045 - 11841895
Alignment:
| Q |
40 |
attcctttgatcttggtactttgattcaggcactgatgtagcaggagaggtagtagatgttggaccacaagtcaaggattttaaagctggtgataaagtt |
139 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||| |||| || |||||| |
|
|
| T |
11842045 |
attcctttgctcttgggactttgattcaggcactgatgtagctggagaggtggtagaggttggaccacaagtcaaggatttcaaatctggcgacaaagtt |
11841946 |
T |
|
| Q |
140 |
attgctgtcctcacacatcaagtactta--tctttcttttacttctttagg |
188 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
11841945 |
attgctaaactcacacatcaagtacttatctctttctttcacttccttagg |
11841895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 11802145 - 11802045
Alignment:
| Q |
45 |
tttgatcttggtactttgattcaggcactgatgtagcaggagaggtagtagatgttggaccacaagtcaaggattttaaagctggtgataaagttattgc |
144 |
Q |
| |
|
|||| |||||| | |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
11802145 |
tttgctcttgggaatttgattcaggcactgatgtagcaggagaggttgtagagattggagaacaagtcaaggattttaaagttggagataaagttattgc |
11802046 |
T |
|
| Q |
145 |
t |
145 |
Q |
| |
|
| |
|
|
| T |
11802045 |
t |
11802045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 11856437 - 11856335
Alignment:
| Q |
40 |
attcctttgatcttggtactttgattcaggcactgatgtagcaggagaggtagtagatgttggaccacaagtcaaggattttaaagctggtgataaagtt |
139 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||| |||||||||| ||| || |||||| |
|
|
| T |
11856437 |
attcttttgctcttgggactttgattcaggcactgatgtatcaggagaggttgtagaggttggaccgcaagtcaacgattttaaagttggagacaaagtt |
11856338 |
T |
|
| Q |
140 |
att |
142 |
Q |
| |
|
||| |
|
|
| T |
11856337 |
att |
11856335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 11431300 - 11431212
Alignment:
| Q |
57 |
actttgattcaggcactgatgtagcaggagaggtagtagatgttggaccacaagtcaaggattttaaagctggtgataaagttattgct |
145 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| || ||||| |||| ||| || |||||||||||| |
|
|
| T |
11431300 |
actttgattcaggcaccgatgtagcaggagaggtagtagattttggatcacaagttaaagatttcaaagttggagacaaagttattgct |
11431212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 11564166 - 11564254
Alignment:
| Q |
57 |
actttgattcaggcactgatgtagcaggagaggtagtagatgttggaccacaagtcaaggattttaaagctggtgataaagttattgct |
145 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| || ||||| |||| ||| || |||||||||||| |
|
|
| T |
11564166 |
actttgattcaggcaccgatgtagcaggagaggtagtagattttggatcacaagttaaagatttcaaagttggagacaaagttattgct |
11564254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 11808106 - 11808050
Alignment:
| Q |
60 |
ttgattcaggcactgatgtagcaggagaggtagtagatgttggaccacaagtcaagg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11808106 |
ttgattcaggcactgatgtagcaggagaggtagtagaagttggaccacaagtcaagg |
11808050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University