View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_16 (Length: 433)
Name: NF13338_low_16
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 387
Target Start/End: Complemental strand, 43961570 - 43961197
Alignment:
| Q |
12 |
acatcatcctgctgaaagaagtttcttgatgagaaaaaataataccttccaaggaagataaatgaaattatccatagaattaagctgatccaattagctt |
111 |
Q |
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| T |
43961570 |
acatcatcctgctgaaagaagtttcttgatgagaaaaaataataccttccaaggaagataaatgaaattatccatagaattaagctgatccaattagctt |
43961471 |
T |
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| Q |
112 |
ccttgtgagcaacccatgcctaatgtgataaacaaccatatgtcagaaacaaaaatcgcaaaaatagtgaagaagattatagagagttaagtagttggtt |
211 |
Q |
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| T |
43961470 |
ccttgtgagcaacccatgcctaatgtgataaacaaccatatgtcagaaacaaaaatcacaaaaatagtgaagaagattatagagagttaagtagttggtt |
43961371 |
T |
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| Q |
212 |
aacttacacttaaaatgataacgttgatataaaaatcagtcaaagttgctaccatccacctgagtcggatgaaaaataatactaagtactacattgtttt |
311 |
Q |
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| T |
43961370 |
aacttacacttaaaatgataacgttgatataaaaatcagtcaaagttgctaccatccacctgagtcggatgaaaaataatactaagtactacattgtttt |
43961271 |
T |
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| Q |
312 |
ctgttnnnnnnncaagtgtcttgatcatgtagttgacattcaattaacgttgtaagagaaagagagattacggagt |
387 |
Q |
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| T |
43961270 |
ctgttaaaaaaacaagtgtcttgatcatgtagttgacattcaattaacgttgtaagag--agagagattacggagt |
43961197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 43954740 - 43954670
Alignment:
| Q |
47 |
aaaataataccttccaaggaagataaatgaaattatccatagaattaagctgatccaattagcttccttgt |
117 |
Q |
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| T |
43954740 |
aaaacaataccttccaaggccgataagtaaaattatccatagaatcgagctgatccaattagcttccttgt |
43954670 |
T |
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