View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_17 (Length: 422)
Name: NF13338_low_17
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 101 - 412
Target Start/End: Complemental strand, 43327340 - 43327029
Alignment:
| Q |
101 |
gtactttgatgatttagtatttagtttgtagacatgtttcacttatgaatggtatgtttccaattgtagatctgtacaaagtatccttatgcagatcaat |
200 |
Q |
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| T |
43327340 |
gtactttgatgatttagtatttagtttgtagacatgtttcacttatgattggtatgtttccaattgtagatctgtacaaagtatccttatgcagatcaat |
43327241 |
T |
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| Q |
201 |
tttatggactcatctcaacctatggacctcaaattcaagtgtgtattttacttcacaagcttcttataaaactgtgttatgctctcaacatgcttttgca |
300 |
Q |
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| T |
43327240 |
tttatggactcatctcaacctatggacctcaaattcaagtgtgtattttacttcacaagcttcttataaaactatgttatgctctcaacatgcttttgca |
43327141 |
T |
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| Q |
301 |
tatcaattgatggcctgctatatatcttttcactacttactaattcatgtatgtttttatgtaacaatgtagggacgtattatgctgccccttaacgtga |
400 |
Q |
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| T |
43327140 |
tatcaattgatggcctgctataaatcttttcactgcttactaattcatgtatgtttttatgtaacaatgtagggacgtattatgctgccccttaacatga |
43327041 |
T |
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| Q |
401 |
catctgatgatg |
412 |
Q |
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| T |
43327040 |
catctgatgatg |
43327029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43327405 - 43327326
Alignment:
| Q |
1 |
acttctctacaaaataacttctgcagttttttaaataagcaaaaaagtacatgtatttgatctaagtactttgatgattt |
80 |
Q |
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| T |
43327405 |
acttctctacaaaataacttctgcagttttttaaataagcaaaaaagtacatgtatttgatctaagtactttgatgattt |
43327326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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