View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_18 (Length: 421)
Name: NF13338_low_18
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 48287165 - 48286786
Alignment:
| Q |
1 |
ttttcattggagaacatgacacaactaacaagtctttccctaaacaaaaccaataaaatttgaagatgaaatgctaattaaacaaatggaataacatgaa |
100 |
Q |
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| T |
48287165 |
ttttcattggagaacatgacacaactaacaagtctttccctaaacaaaaccaataaaatttgaagatgaaatgctaa----acaaatggaataacatgaa |
48287070 |
T |
|
| Q |
101 |
tgaagattattattaactaaaaaagtgatcgatgaagagggtcatcatataacatagatagaatagttatggcgttaccatgcattaccatttgaataca |
200 |
Q |
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| T |
48287069 |
tgaagattattattaactaaacaagtgat----gaagagggtcatcatataacatagatagaatagttatggcgttaccatgcattaccatttgaataca |
48286974 |
T |
|
| Q |
201 |
gtgaaggaacaaggaggcatgtcaccattttgaatctgtctcaaagtaacatcaccacaaacaacagtaacaccaaccatcatggatttccaaccttgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48286973 |
gtgaaggaacaaggaggcatgtcaccattttgaatctgtctcaaagtaacatcaccacaaacaacagtaacaccaatcatcatggatttccaaccttgaa |
48286874 |
T |
|
| Q |
301 |
ccctaacactcgttcttgttttcacctcaacactaggcaccaaagctttactactaaaagcacttttcaacttcctcctttgcttctc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48286873 |
ccctaacactcgttcttgttttcacctcaacactaggcaccaaagctttactactaaaagcacttttcaacttcctcctttgtttctc |
48286786 |
T |
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