View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_19 (Length: 410)
Name: NF13338_low_19
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 17408100 - 17407929
Alignment:
| Q |
31 |
cccccatgtgagtgtactatctttgtactagagaacgcgaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctt |
130 |
Q |
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| T |
17408100 |
cccccatgtgagtgtactatctttgcattagagaacgcgaagctgtgcaaggaaggcggcacaaagatccaagaaaagaaactggggaccctcaagcctt |
17408001 |
T |
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| Q |
131 |
tgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaagatattaacacaagtttgagaatgtt |
202 |
Q |
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| T |
17408000 |
tgaagatcaagcagatatttctcctgagttttgtacagctgtgaaagatattaacataggtttgagaatgtt |
17407929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 4049648 - 4049825
Alignment:
| Q |
25 |
tcaagtcccccatgtgagtgtactatctttgtactagagaacgcgaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctca |
124 |
Q |
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| T |
4049648 |
tcaagtccctcatgtgagtgcactatattcgcactacagaacacgaagctgcgcaaggaaggcagcacaaagatccaagaaaagaaactggggtccctca |
4049747 |
T |
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| Q |
125 |
accctttgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaagatattaacacaagtttgagaatgtt |
202 |
Q |
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| T |
4049748 |
agtctttgaagatcaagcagatatttctcctgagttttgtacagctgtaaaagatattaacaaatgtttgagaatgtt |
4049825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 17412678 - 17412546
Alignment:
| Q |
69 |
gaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaa |
168 |
Q |
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| T |
17412678 |
gaagccgctcaaggaaggaagcacaaagatccaagaaagcaaattggggtccctcaagcctttgaatatcaagtagatatttctcctcagttttgtacaa |
17412579 |
T |
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| Q |
169 |
ctgtaaaagatattaacacaagtttgagaatgtt |
202 |
Q |
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| T |
17412578 |
ctacaaaagatattaacacaa-cttgagaatgtt |
17412546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 17407393 - 17407310
Alignment:
| Q |
253 |
agcatcagtgaatgaggatgaaaaagttactaataagtcggtaattaaacaattcatttaaatctaaatgcaacatagattagg |
336 |
Q |
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| T |
17407393 |
agcatcaatgaatgacaatgaaaaagttaatactataccggtaaatatacaattcgtttaaatctaaatgcaacatagattagg |
17407310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 4050474 - 4050515
Alignment:
| Q |
295 |
aattaaacaattcatttaaatctaaatgcaacatagattagg |
336 |
Q |
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| T |
4050474 |
aattaaacaattcgtttaaatcgaaatgcaacatagattagg |
4050515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Complemental strand, 17411786 - 17411753
Alignment:
| Q |
294 |
taattaaacaattcatttaaatctaaatgcaaca |
327 |
Q |
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| T |
17411786 |
taattaaacaattcatttaaatctaaatgaaaca |
17411753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 2783348 - 2783518
Alignment:
| Q |
10 |
gcaacataatacacctcaagtcccccatgtgagtgta----ctatctttgtactagagaacgcgaagctgcgcaaggaaggcagaacaaagatccaagaa |
105 |
Q |
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| T |
2783348 |
gcaacataataaacctcaagtccctcatgtgacttaattccctagctttgcactagagaacacgaagctgcgcaaggaaggcaacacaaagatccaagaa |
2783447 |
T |
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| Q |
106 |
aagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaa |
176 |
Q |
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| T |
2783448 |
aagaaactggggatcctcaaccctttgaagatcaaacagatacttctcctgagttttgtagagctgtaaaa |
2783518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 393
Target Start/End: Original strand, 45863301 - 45863380
Alignment:
| Q |
310 |
ttaaatctaaatgcaacatagattaggattatcagggtaactaccggcctgcacttcgaacaggaccacataattgttaaccat |
393 |
Q |
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| T |
45863301 |
ttaactctgaatgcaacatagattaggattatcagggtaacta----cctgcactttgaacaggaccacataattgttaaccat |
45863380 |
T |
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