View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13338_low_2 (Length: 924)

Name: NF13338_low_2
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13338_low_2
NF13338_low_2
[»] chr8 (4 HSPs)
chr8 (461-911)||(33823785-33824235)
chr8 (157-370)||(33823481-33823694)
chr8 (18-131)||(33823346-33823459)
chr8 (488-591)||(28437310-28437413)
[»] chr5 (2 HSPs)
chr5 (487-644)||(13481015-13481172)
chr5 (510-567)||(18198182-18198239)
[»] chr4 (3 HSPs)
chr4 (509-621)||(23663582-23663694)
chr4 (488-534)||(35721705-35721751)
chr4 (509-599)||(45763667-45763757)
[»] chr7 (1 HSPs)
chr7 (488-627)||(8132030-8132169)
[»] chr2 (4 HSPs)
chr2 (512-615)||(41335315-41335418)
chr2 (488-566)||(3591840-3591918)
chr2 (487-537)||(3945955-3946005)
chr2 (509-594)||(24563321-24563406)
[»] chr1 (1 HSPs)
chr1 (509-539)||(34645998-34646028)


Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 461 - 911
Target Start/End: Original strand, 33823785 - 33824235
Alignment:
Q  461 tcatcagaaaaccaacaacatctaaggtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatt 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823785 tcatcagaaaaccaacaacatctaaggtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatt 33823884  T
Q  561 tctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacgttccaattggaggtggctgccggaaaaacaagagcatcggtgcctcaaa 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823885 tctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacgttccaattggaggtggctgccggaaaaacaagagcatcggtgcctcaaa 33823984  T
Q  661 caacacggcaaaaatagctacaaacaagatgaaaacagtttcttcttcggagtttattggaaggtcaacaagtggtcaagggtttgatctcgaacacgtt 760  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823985 caacgcggcaaaaatagctacaaacaagatgaaaacagtttcttcttcggagtttattggaaggtcaacaagtggtcaagggtttgatctcgaacacgtt 33824084  T
Q  761 gttccaccacaaagtcaaatcctctggggttctcctcaaaattctcatatactttctttgctaagatctagtcaaaaccaaaaccctaaccctaatcatg 860  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824085 gttccaccacaaagtcaaatcctatggggttctcctcaaaattctcatatactttctttgctaagatctagtcaaaaccaaaaccctaaccctaatcatg 33824184  T
Q  861 ttaaggaagaaggcaataacttcatagggtcccatgtttctcacatgatga 911  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824185 ttaaggaagaaggcaataacttcatagggtcccatgtttctcacatgatga 33824235  T

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Target: chr8; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 157 - 370
Target Start/End: Original strand, 33823481 - 33823694
Alignment:
Q  157 atacaaacaacaaaccgacttgctttatcttttctccactaacacaaaaagactcaccacccttttgcttttctgnnnnnnnnnnggattgttgtagcta 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  33823481 atacaaacaacaaaccgacttgctttatcttttctccactaacacaaaaagactcaccacccttttgcttttctgttttttttttggattgttgtagcta 33823580  T
Q  257 gatccacaacaaaactaaagaaagatgatccaagaactctttggtaatggtgctagtgctaccctcacatcaagtgaaagaaactactcttccattaatg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823581 gatccacaacaaaactaaagaaagatgatccaagaactctttggtaatggtgctagtgctaccctcacatcaagtgaaagaaactactcttccattaatg 33823680  T
Q  357 gaggagttttactt 370  Q
    ||||||||||||||    
T  33823681 gaggagttttactt 33823694  T

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Target: chr8; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 33823346 - 33823459
Alignment:
Q  18 cattcttgatatcccctaattctatataattctttgggaacaaactagtaccaaactgccaataaagctagcaaattgaattctcaaaggcaagtgtcat 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823346 cattcatgatatcccctaattctatataattctttgggaacaaactagtaccaaactgccaataaagctagcaaattgaattctcaaaggcaagtgtcat 33823445  T
Q  118 agtagagttctaca 131  Q
    ||||||||||||||    
T  33823446 agtagagttctaca 33823459  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 488 - 591
Target Start/End: Original strand, 28437310 - 28437413
Alignment:
Q  488 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgga 587  Q
    ||||||||||| || ||  ||||||||||||| ||||||||||||||||| |  |||||||| ||  | ||||||||||| |||||| |  | |||||||    
T  28437310 tgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattgga 28437409  T
Q  588 caaa 591  Q
    ||||    
T  28437410 caaa 28437413  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 644
Target Start/End: Original strand, 13481015 - 13481172
Alignment:
Q  487 gtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgg 586  Q
    |||||||||||| |||||| | ||||||||||| || |||||||||||||||| | | || || ||  | ||||||||||| |||||  |  | ||||||    
T  13481015 gtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattgg 13481114  T
Q  587 acaaaaggaggtgctttaagaaacgttccaattggaggtggctgccggaaaaacaaga 644  Q
    |||||||| || |||||| | ||||||||||| || ||||| ||  | ||||||||||    
T  13481115 acaaaaggtggagctttacgcaacgttccaatcggtggtggatgtagaaaaaacaaga 13481172  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 567
Target Start/End: Original strand, 18198182 - 18198239
Alignment:
Q  510 acacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaa 567  Q
    ||||||||||||| |||||||||||||| ||| |||  |||||||| || ||||||||    
T  18198182 acacaaaattttgctactacaacaactacaacgtcaaacagcctcgacacttctgcaa 18198239  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 509 - 621
Target Start/End: Original strand, 23663582 - 23663694
Alignment:
Q  509 aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaa 608  Q
    ||||| |||||||| |||| ||||||||| | ||||||||| ||||| || ||||||||||||||  | ||||||||||||| ||| |||||  | ||||    
T  23663582 aacactaaattttgctacttcaacaactacagcctcactcaacctcgtcacttctgcaagacatgtaggcgttattggacaagagggggtgcacttagaa 23663681  T
Q  609 acgttccaattgg 621  Q
    | |||||| ||||    
T  23663682 atgttccagttgg 23663694  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 534
Target Start/End: Original strand, 35721705 - 35721751
Alignment:
Q  488 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaa 534  Q
    ||||||||||| || ||| |||||||||| |||||||||||||||||    
T  35721705 tgtccaagatgtgattcaacaaacacaaagttttgttactacaacaa 35721751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 509 - 599
Target Start/End: Complemental strand, 45763757 - 45763667
Alignment:
Q  509 aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtg 599  Q
    ||||| ||||| ||||||||||| ||||| |||||| | |||||||| || |||||||| |  ||||| ||||| ||||| ||||| ||||    
T  45763757 aacaccaaattctgttactacaataactacaacctctcccagcctcgtcacttctgcaaaaactgccgacgttactggactaaaggcggtg 45763667  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 488 - 627
Target Start/End: Complemental strand, 8132169 - 8132030
Alignment:
Q  488 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgga 587  Q
    ||||||||||| || ||| |||||||||| || || |||||||||||||| || ||  | || || |||||||| ||||| || || |||||||||||||    
T  8132169 tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattgga 8132070  T
Q  588 caaaaggaggtgctttaagaaacgttccaattggaggtgg 627  Q
    | ||||| |||||  |  ||||||||||  ||||||||||    
T  8132069 ctaaaggtggtgcacttcgaaacgttcctgttggaggtgg 8132030  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 512 - 615
Target Start/End: Original strand, 41335315 - 41335418
Alignment:
Q  512 acaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacg 611  Q
    |||||||||||||||||||||||||||||| |  |||| ||  | || || |||||||||||  | ||||||||||||| ||| ||||| |||||||| |    
T  41335315 acaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggggtgcattaagaaatg 41335414  T
Q  612 ttcc 615  Q
    ||||    
T  41335415 ttcc 41335418  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 566
Target Start/End: Original strand, 3591840 - 3591918
Alignment:
Q  488 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgca 566  Q
    ||||||||||| |||||  |||| || |||||||||||||||||||||||||||    |||| ||||||||||||||||    
T  3591840 tgtccaagatgtgactctacaaataccaaattttgttactacaacaactataacaagtctcaacctcgccatttctgca 3591918  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 3946005 - 3945955
Alignment:
Q  487 gtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaacta 537  Q
    ||||||| | || ||||||||||||||||| ||||||||||||||||||||    
T  3946005 gtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaacta 3945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 594
Target Start/End: Original strand, 24563321 - 24563406
Alignment:
Q  509 aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaagg 594  Q
    ||||| ||||| || |||||||||||||| |||||| |||||||||| |||||||| || |  |||||||| || ||||| |||||    
T  24563321 aacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactgccgtcgctactggaccaaagg 24563406  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 509 - 539
Target Start/End: Original strand, 34645998 - 34646028
Alignment:
Q  509 aacacaaaattttgttactacaacaactata 539  Q
    |||||||||||||||||||||||||||||||    
T  34645998 aacacaaaattttgttactacaacaactata 34646028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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