View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_20 (Length: 401)
Name: NF13338_low_20
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 52611013 - 52611171
Alignment:
| Q |
18 |
attagtactagtaaatctaaccatatacgtataataataattcgtccgtgcatctcacatgtaagatctagtttatcatgtttccaaatccaggtctgat |
117 |
Q |
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| T |
52611013 |
attagtactagtaaatctaaccatatacgtataataataattcgtccgtgcatctcacatgtaagatctagtttatcatgtttccaaatccaggtctgat |
52611112 |
T |
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| Q |
118 |
gatagcaatgaacatgactgaaaatgattttccacaataatcgtcacactgtcgcgacc |
176 |
Q |
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| T |
52611113 |
gatagcaatgaacatgactgaaaatgattttccacaataatcgtcacactgtcgcgacc |
52611171 |
T |
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Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 314 - 401
Target Start/End: Original strand, 52611309 - 52611396
Alignment:
| Q |
314 |
gccaccaccgcaacaatcctccaccaccgttaccgcgattcaacctcaatccgacattgacactgccaccgtcgatgatcatgaatct |
401 |
Q |
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| T |
52611309 |
gccaccaccgcaacaatcctccaccaccgttaccgcgattcaacctcaatccgacattgacagtgccaccgtcgatgatcatgaatct |
52611396 |
T |
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