View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13338_low_22 (Length: 390)
Name: NF13338_low_22
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 1587223 - 1587586
Alignment:
| Q |
11 |
gatgaaggtagcagcatgtcttatgtggaaagaagagttaaaccaaagaccacgaagaagatgaaaccnnnnnnncatgataagaaaaatttgtcatcac |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
1587223 |
gatgaaggtagcagcatgtcttatgtggaaagaagagttaaaccaaagaccacgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcac |
1587322 |
T |
|
| Q |
111 |
ctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587323 |
ctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatct |
1587422 |
T |
|
| Q |
211 |
cagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagttgattttctcaccgacatagaaaaggatgaaagtgataaaccggttggttta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
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| T |
1587423 |
cagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagttgattttctcaccgacatagaaaaggatgaaagtaataaacaggatggttta |
1587522 |
T |
|
| Q |
311 |
gaagtgatcgtgttggacccttcttttagagagttcagaatgtctttgaggaagtggagcatgg |
374 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1587523 |
gaagtgactgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggagcatgg |
1587586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 1591000 - 1590654
Alignment:
| Q |
11 |
gatgaaggtagcagcatgtcttatgtggaaagaagagttaaaccaaagaccacgaagaagatgaaaccnnnnnnncatgataagaaaaatttgtcatcac |
110 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
1591000 |
gatgaaggtagcagcatgttttatgcggaaagaagtgttaaaccaaagaccacgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcac |
1590901 |
T |
|
| Q |
111 |
ctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1590900 |
ctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcggatct |
1590801 |
T |
|
| Q |
211 |
cagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagttgattttctcaccgacatagaaaaggatgaaagtgataaaccggttggttta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1590800 |
cagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagtcgattttctcaccgacatagaaaaggatgaaagtgataaaccggttggttta |
1590701 |
T |
|
| Q |
311 |
gaagtgatcgtgttggacccttcttttagagagttcagaatgtcttt |
357 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1590700 |
gaagtgattgtgttggacccttcttttagagagttcagaatgtcttt |
1590654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 1580751 - 1580963
Alignment:
| Q |
39 |
aaagaagagttaaaccaaagaccacgaagaagatgaaaccnnnnnnncatgataagaaaaatttgtcatcacctccaccaatattgcctattcacgttga |
138 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| ||| || |||||| |||| |||||||||||||| ||||||||||||||| | || || |
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| T |
1580751 |
aaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcga |
1580850 |
T |
|
| Q |
139 |
gaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatctcagggatgaccaaaatcgtcttttaatg |
238 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| || ||||||||||| | |||||| ||||||||||||| |
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| T |
1580851 |
gatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatg |
1580950 |
T |
|
| Q |
239 |
ccgcttaaagaag |
251 |
Q |
| |
|
| |||||||||| |
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|
| T |
1580951 |
tcacttaaagaag |
1580963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 1604064 - 1603852
Alignment:
| Q |
39 |
aaagaagagttaaaccaaagaccacgaagaagatgaaaccnnnnnnncatgataagaaaaatttgtcatcacctccaccaatattgcctattcacgttga |
138 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| ||| || |||||| |||| |||||||||||||| ||||||||||||||| | || || |
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| T |
1604064 |
aaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcga |
1603965 |
T |
|
| Q |
139 |
gaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatctcagggatgaccaaaatcgtcttttaatg |
238 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| || ||||||||||| | |||||| ||||||||||||| |
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| T |
1603964 |
gatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatg |
1603865 |
T |
|
| Q |
239 |
ccgcttaaagaag |
251 |
Q |
| |
|
| |||||||||| |
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|
| T |
1603864 |
tcacttaaagaag |
1603852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 1581034 - 1581106
Alignment:
| Q |
295 |
taaaccggttggtttagaagtgatcgtgttggacccttcttttagagagttcagaatgtctttgaggaagtgg |
367 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1581034 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtgg |
1581106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 1603781 - 1603709
Alignment:
| Q |
295 |
taaaccggttggtttagaagtgatcgtgttggacccttcttttagagagttcagaatgtctttgaggaagtgg |
367 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1603781 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtgg |
1603709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 19270583 - 19270199
Alignment:
| Q |
11 |
gatgaaggtagcagcatgtcttatgtggaaagaagagttaaaccaaagaccacgaagaagatgaaaccnnnnnnncatgataagaaaaatttgtcatcac |
110 |
Q |
| |
|
||||||||||| ||||||||| | | ||||||||||| |||||||||| |||||||||||||||||| || |||||| ||||||||||||| | |
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|
| T |
19270583 |
gatgaaggtagaagcatgtctcacgcagaaagaagagtgaaaccaaagagcacgaagaagatgaaaccaaaaaaacaagataaggaaaatttgtcatctc |
19270484 |
T |
|
| Q |
111 |
ctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatct |
210 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||| ||| |||| |
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|
| T |
19270483 |
ctccaccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatatcaaatatatcatgggtaaaaaattgtttgcatcaaatct |
19270384 |
T |
|
| Q |
211 |
cagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagttgattttctcaccgacatag---------------------aaaaggatgaa |
289 |
Q |
| |
|
|| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
19270383 |
caaagatgaccaaaatcgtctattaatgtcgattaaagaagtcaaagttgattttctcaccgacatagaaaaagacgtgtctttaactaaaaaggatgaa |
19270284 |
T |
|
| Q |
290 |
agtgataaaccggttggtttagaagtgatcgtgttggacccttcttttagagagttcagaatgtctttgaggaagtggagcatgg |
374 |
Q |
| |
|
| | | ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
19270283 |
aataacaaaccagttggtttagaagtgattgtgttggacccttcttttagagagttcacaatgtcgttgaggaagtggagcatgg |
19270199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 340
Target Start/End: Complemental strand, 39616175 - 39615906
Alignment:
| Q |
89 |
gataagaaaaatttgtcatcacctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgta |
188 |
Q |
| |
|
||||||||||||||| | | |||||| |||||||| |||||| | || ||||||||||||| ||||| |||||||||||||||| | ||||||||| | |
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|
| T |
39616175 |
gataagaaaaatttggctttacctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaa |
39616076 |
T |
|
| Q |
189 |
aaaaattgtctgcgtcagatctcagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagttgattttctcacc--gacata--------- |
277 |
Q |
| |
|
| ||||||| |||||||||| || || | ||||| ||||||||||||||| |||||||||| | || ||| |||||||||| |||| | |
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|
| T |
39616075 |
agaaattgtttgcgtcagatatcgatgaaggccaaagtcgtcttttaatgccacttaaagaagacgaacttggttttctcaccaagacagaaaaggagac |
39615976 |
T |
|
| Q |
278 |
-------gaaaaggatgaaagtgataaaccggttggtttagaagtgatcgtgttggacccttcttttaga |
340 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
39615975 |
tttagatgaaaaggatgaaaacgataaaccggttggtttagaagtgattgtgttggacccttattttaga |
39615906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 39616280 - 39616233
Alignment:
| Q |
23 |
agcatgtcttatgtggaaagaagagttaaaccaaagaccacgaagaag |
70 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
39616280 |
agcatgtcttatgcggaaagaagaacgaaaccaaagaccacgaagaag |
39616233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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