View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_25 (Length: 328)
Name: NF13338_low_25
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 7567711 - 7568017
Alignment:
| Q |
5 |
gagtgccaacatcactaacatcttattttggttgaaattcaaattgatctcattaattaacgtggtttaatgaaacaagtttaaagtggacatttgaggt |
104 |
Q |
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| T |
7567711 |
gagtgccaacatcactaacatcttattttggttgaaattcaaattcatatcactaattaacgtggtttaatgaaacaagtttaaagtggacatttgaggt |
7567810 |
T |
|
| Q |
105 |
taacttagtatagcaagttaatccaacatttttattgtattaagaaaatttaatatcgttgtaaaccggtgacaacacaaatgaaaccggttgtagcaag |
204 |
Q |
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| T |
7567811 |
taacttagtatagcaagttaatccaacttttttattgtattaagaaaatttaatatcgttgtaaaccggtgacaacacaaatgaaaccggttgtagcaag |
7567910 |
T |
|
| Q |
205 |
tcatttcataagtaccactattttaaccaatatgtgtgttaaagaatgtgttacttcctaaaaatgtgttactaacattatatgctatcttaataatgga |
304 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7567911 |
tcatttcataagtacaactattttaaccaatatgtgtgttaaagaatgtgttacttcctaaaaatgtgttactaacattatatgctatcttaataatgga |
7568010 |
T |
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| Q |
305 |
gatggat |
311 |
Q |
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||||||| |
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| T |
7568011 |
gatggat |
7568017 |
T |
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