View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13338_low_3 (Length: 710)
Name: NF13338_low_3
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 618; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 7 - 692
Target Start/End: Complemental strand, 11859357 - 11858672
Alignment:
| Q |
7 |
atcatcattcttaatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaaca |
106 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| || || |||||||||| | ||||||||||||||||||| |
|
|
| T |
11859357 |
atcaccattctcaatctcaattcgcaaatcatctataacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaaca |
11859258 |
T |
|
| Q |
107 |
tcaaattggtgatgagggccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgc |
206 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859257 |
tcaaattggtgatgaagaccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgc |
11859158 |
T |
|
| Q |
207 |
caattccaggaacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859157 |
caattccaggaacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttc |
11859058 |
T |
|
| Q |
307 |
tctgccaacagctacatgctcagtacttttctcaaaatctgtgtatgccaactttcttttctcattagtattactaataactgttttttcttccttcagc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859057 |
tctgccaacagctacatgctcagtacttttctcaaaatctttgtatgccaactttcttttctcattagtattactaataactgttttttcttccttcagc |
11858958 |
T |
|
| Q |
407 |
agcagttcgagttcctcggtggctttgttgacttgaacaatggctttcttgaattggtaacgatttattatgtttaagcccgttttgataagcgattttg |
506 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
11858957 |
agcagttcgagttcctcagtggctttgttgacttggacaatggctttcttgaattggtaacgatttataatgtttaagcctgttttgataagcgattttg |
11858858 |
T |
|
| Q |
507 |
atgagtcggtgatactctccttgtaacgaagatcctccatcaaatcgttcaaatcgatgactacatctttaaccttttgaagccactcggagtagtggct |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11858857 |
atgagtcggtgatactctccttgtaacgaagatcctccatcaaatcgttcaaatcgatgactacatctttaaccttttgaagccactcggagtagtggct |
11858758 |
T |
|
| Q |
607 |
gtgtttatggactttgtcattgatttgtgtgagaatgttttcaagctgggtgatgtcaattcctgataaacgacttggtaggggtt |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11858757 |
gtgtttatggactttgtcattgatttgtgtgagaatgttttcaagctgggtgatgtcaagtcctgataaacgacttggtaggggtt |
11858672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 12038130 - 12037773
Alignment:
| Q |
17 |
ttaatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggt |
116 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| | | ||||| |||| |||| |||||||||||||| ||| |
|
|
| T |
12038130 |
ttaatctcaaatctcaaatcatctataacaagtaagaggcgtttctcatgatgagact---cggcaacactttttgctatagattcaacatcaaa--ggt |
12038036 |
T |
|
| Q |
117 |
gatgagggccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccagg |
216 |
Q |
| |
|
||||||||||||| ||| || ||| || || || |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12038035 |
t----------ttgatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccagg |
12037946 |
T |
|
| Q |
217 |
aacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaaca |
316 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||| |||| || |||| |||| |||||||||||||| ||| | |||||| ||||||| |||||| |
|
|
| T |
12037945 |
aacaccaacaataacaataacaacaggaacagcagcatcagtgttcttcaggttcaccagtttatctataagctcttccttctcattttctcttccaaca |
12037846 |
T |
|
| Q |
317 |
gctacatgctcagtacttttctcaaaatctgtgtatgccaactttcttttctcattagtattactaataactg |
389 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
12037845 |
gctacatgcttggtatttttctcaaagtcttcacatgcagactttcttttctcagtagtattactaataactg |
12037773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 516 - 674
Target Start/End: Complemental strand, 12037658 - 12037503
Alignment:
| Q |
516 |
tgatactctccttgtaacgaagatcctccatcaaatcgttcaaatcgatgactacatctttaaccttttgaagccactcggagtagtggctgtgtttatg |
615 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||| || |
|
|
| T |
12037658 |
tgatactctctttgtaacgaagatcctcagtcaaatcgttcaaatcgattactacatctttaaccttttgaagccactcgg---agtggctctttttttg |
12037562 |
T |
|
| Q |
616 |
gactttgtcattgatttgtgtgagaatgttttcaagctgggtgatgtcaattcctgata |
674 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||| || |||||||||||||| |
|
|
| T |
12037561 |
gactttgtcattgatttgtttaagattgttttcaagctggtcgaggtcaattcctgata |
12037503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 159 - 322
Target Start/End: Complemental strand, 11827037 - 11826868
Alignment:
| Q |
159 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagca------gt |
252 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | || |||||||||| || |
|
|
| T |
11827037 |
ctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaatagcaataaaaacaggaacagcagcatccgt |
11826938 |
T |
|
| Q |
253 |
atcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctaca |
322 |
Q |
| |
|
||| | | |||| |||||||||| ||||||||| || |||||||| ||||||| |||||||||||| |
|
|
| T |
11826937 |
atcggcgctcttcaggttcagcagttgatctataatttctttcttctcattttctcttccaacagctaca |
11826868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 130 - 315
Target Start/End: Original strand, 11903281 - 11903466
Alignment:
| Q |
130 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaata |
229 |
Q |
| |
|
||||||||||| || ||||||| || |||||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11903281 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatg |
11903380 |
T |
|
| Q |
230 |
gcaattacaa-aaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaac |
315 |
Q |
| |
|
|||| ||| || ||| | || | || ||||||| |||||| |||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
11903381 |
acaataacaggaacgaa-atcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaac |
11903466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 519 - 591
Target Start/End: Complemental strand, 11826671 - 11826599
Alignment:
| Q |
519 |
tactctccttgtaacgaagatcctccatcaaatcgttcaaatcgatgactacatctttaaccttttgaagcca |
591 |
Q |
| |
|
|||||||||| | || ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
11826671 |
tactctccttttgtcggagatcctccatcaaatcattcaaatcgatgagtacttctttaaccttttgaagcca |
11826599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 11730895 - 11730826
Alignment:
| Q |
159 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
228 |
Q |
| |
|
|||||||||||||||| || ||||| || || ||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
11730895 |
ctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaat |
11730826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 11730451 - 11730382
Alignment:
| Q |
159 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
228 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| ||||||||||| || || ||||| | |||||||||||| |
|
|
| T |
11730451 |
ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat |
11730382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 662
Target Start/End: Original strand, 4409916 - 4409964
Alignment:
| Q |
614 |
tggactttgtcattgatttgtgtgagaatgttttcaagctgggtgatgt |
662 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |||| |||||| |
|
|
| T |
4409916 |
tggactttgtcattgatttgtttgagattgttttcaaactggttgatgt |
4409964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University