View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13338_low_30 (Length: 297)

Name: NF13338_low_30
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13338_low_30
NF13338_low_30
[»] chr1 (8 HSPs)
chr1 (22-281)||(49471932-49472192)
chr1 (22-62)||(21815822-21815862)
chr1 (22-63)||(22186278-22186319)
chr1 (22-62)||(21818051-21818091)
chr1 (30-63)||(19967727-19967760)
chr1 (22-59)||(24974185-24974222)
chr1 (30-62)||(8996980-8997012)
chr1 (30-62)||(30893872-30893904)
[»] chr8 (7 HSPs)
chr8 (22-64)||(25820643-25820685)
chr8 (30-62)||(14058418-14058450)
chr8 (30-62)||(18040790-18040822)
chr8 (30-62)||(22618486-22618518)
chr8 (33-63)||(1039292-1039322)
chr8 (33-63)||(7999510-7999540)
chr8 (30-62)||(10533097-10533129)
[»] chr5 (10 HSPs)
chr5 (22-63)||(36712948-36712989)
chr5 (22-63)||(5590996-5591037)
chr5 (22-62)||(20899895-20899935)
chr5 (30-62)||(22922348-22922380)
chr5 (30-62)||(22922991-22923023)
chr5 (22-62)||(23495209-23495249)
chr5 (30-62)||(38608130-38608162)
chr5 (26-63)||(33622795-33622832)
chr5 (30-62)||(19330200-19330232)
chr5 (30-62)||(26377353-26377385)
[»] scaffold0265 (2 HSPs)
scaffold0265 (22-62)||(16947-16987)
scaffold0265 (22-62)||(14718-14758)
[»] chr4 (10 HSPs)
chr4 (22-62)||(13861175-13861215)
chr4 (22-62)||(17282789-17282829)
chr4 (22-62)||(25239555-25239595)
chr4 (22-62)||(56581780-56581820)
chr4 (22-63)||(10421907-10421948)
chr4 (30-62)||(10271499-10271531)
chr4 (22-62)||(18284824-18284864)
chr4 (30-70)||(26781103-26781143)
chr4 (30-63)||(8081904-8081937)
chr4 (34-62)||(10282221-10282249)
[»] chr2 (4 HSPs)
chr2 (22-62)||(27347031-27347071)
chr2 (23-63)||(21148683-21148723)
chr2 (29-62)||(22453121-22453154)
chr2 (30-63)||(3770118-3770151)
[»] chr7 (9 HSPs)
chr7 (22-63)||(47295977-47296018)
chr7 (30-64)||(2250300-2250334)
chr7 (22-64)||(18152987-18153029)
chr7 (22-62)||(18185485-18185525)
chr7 (30-64)||(29164707-29164741)
chr7 (33-62)||(9549281-9549310)
chr7 (30-71)||(24786831-24786872)
chr7 (30-62)||(5643826-5643858)
chr7 (30-62)||(5649678-5649710)
[»] chr3 (5 HSPs)
chr3 (22-63)||(31530893-31530934)
chr3 (30-62)||(19773246-19773278)
chr3 (32-62)||(8733244-8733274)
chr3 (32-62)||(9085485-9085515)
chr3 (30-62)||(22914912-22914944)
[»] scaffold0084 (1 HSPs)
scaffold0084 (22-62)||(54832-54872)
[»] chr6 (7 HSPs)
chr6 (30-64)||(15120027-15120061)
chr6 (30-63)||(3876189-3876222)
chr6 (30-63)||(8305921-8305954)
chr6 (30-63)||(15319286-15319319)
chr6 (30-62)||(18043199-18043231)
chr6 (30-62)||(19860359-19860391)
chr6 (30-62)||(24438883-24438915)
[»] scaffold0083 (1 HSPs)
scaffold0083 (30-63)||(4504-4537)
[»] scaffold0034 (1 HSPs)
scaffold0034 (30-63)||(47725-47758)
[»] scaffold0362 (1 HSPs)
scaffold0362 (22-62)||(7648-7688)
[»] scaffold0063 (1 HSPs)
scaffold0063 (30-62)||(37086-37118)
[»] scaffold0025 (1 HSPs)
scaffold0025 (30-62)||(86670-86702)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 281
Target Start/End: Complemental strand, 49472192 - 49471932
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaaatatattcatttatgttgagaatgtctctaaagcgttgagcaagtcagagtgaaaaac 121  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49472192 attcacgacaccggcagtcaccttctgattaggtaccatcaaatatattcatttatgttgagaatgtctctaaagcgtagagcaagtcagagtgaaaaac 49472093  T
Q  122 aaataatttgaacgattgatgaataaatcaactatgatttatattatgtacctaaatttgacaataacaaatacactttgactctttgctgctctatttc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49472092 aaataatttgaacgattgatgaataaatcaactatgatttatattatgtacctaaatttgacaataacaaagacactttgactctttgctgctctatttc 49471993  T
Q  222 tt-actgtaaacaagaaagatctctgccacaggaaacatgacactcccagctcatgttgtt 281  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49471992 ttgactgtaaacaagaaagatctctgccacaggaaacatgacactcccagctcatgttgtt 49471932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 21815822 - 21815862
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21815822 attcacgacaccggcagtcaccttctgatcaggtacgatca 21815862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 22186278 - 22186319
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  22186278 attcacgacaccgacagtcaccttctgatcaggtatgatcaa 22186319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 21818051 - 21818091
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  21818051 attcacgataccggcagtcaccttctgattaggtacgatca 21818091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 19967727 - 19967760
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||| ||||||||||||||||||||||||||    
T  19967727 caccggcggtcaccttctgatcaggtacgatcaa 19967760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 24974185 - 24974222
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacga 59  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  24974185 attcacgacaccggcaatcaccttctgatcagatacga 24974222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 8996980 - 8997012
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||| ||||||||||||||||||||||||||||    
T  8996980 caccagcagtcaccttctgatcaggtacgatca 8997012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 30893904 - 30893872
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||||||||||||||||||||| |||||||||    
T  30893904 caccggcagtcaccttctgatcaagtacgatca 30893872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 25820685 - 25820643
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaaa 64  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25820685 attcacgacaccggcagtcaccttctgatcaggtacgatcaaa 25820643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 14058418 - 14058450
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  14058418 caccggcagtcaccttctgatcaggtacgatca 14058450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 18040790 - 18040822
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  18040790 caccggcagtcaccttctgatcaggtacgatca 18040822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 22618486 - 22618518
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  22618486 caccggcagtcaccttctgatcaggtacgatca 22618518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 1039292 - 1039322
Alignment:
Q  33 cggcagtcaccttctgatcaggtacgatcaa 63  Q
    |||||||||||||||||||||||||||||||    
T  1039292 cggcagtcaccttctgatcaggtacgatcaa 1039322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 7999540 - 7999510
Alignment:
Q  33 cggcagtcaccttctgatcaggtacgatcaa 63  Q
    |||||||||||||||||||||||||||||||    
T  7999540 cggcagtcaccttctgatcaggtacgatcaa 7999510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 10533097 - 10533129
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||||||||||||||||||||| |||||||||    
T  10533097 caccggcagtcaccttctgatcatgtacgatca 10533129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 36712948 - 36712989
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36712948 attcacgacaccggcagtcaccttctgatcaggtacgatcaa 36712989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 5590996 - 5591037
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaa 63  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5590996 attcacgacaccggcagtcaccttctaatcaggtacgatcaa 5591037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 20899895 - 20899935
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  20899895 attcacgacaccggcaatcaccttctgatcaggtatgatca 20899935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 22922348 - 22922380
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  22922348 caccggcagtcaccttctgatcaggtacgatca 22922380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 22922991 - 22923023
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  22922991 caccggcagtcaccttctgatcaggtacgatca 22923023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 23495249 - 23495209
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  23495249 attcacgacaccgatagtcaccttctgatcaggtacgatca 23495209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 38608162 - 38608130
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  38608162 caccggcagtcaccttctgatcaggtacgatca 38608130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 33622795 - 33622832
Alignment:
Q  26 acgacaccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  33622795 acgacaccgacagtcaccttttgatcaggtacgatcaa 33622832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 19330200 - 19330232
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||| |||||||||||||||||||||||||||    
T  19330200 caccgacagtcaccttctgatcaggtacgatca 19330232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 26377353 - 26377385
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||| |||||||||||||||||||||||||||    
T  26377353 caccgacagtcaccttctgatcaggtacgatca 26377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 16987 - 16947
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16987 attcacgacaccggcagtcaccttctgatcaggtacgatca 16947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 14758 - 14718
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  14758 attcacgataccggcagtcaccttctgattaggtacgatca 14718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 13861215 - 13861175
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13861215 attcacgacaccggcagtcaccttctgatcaggtacgatca 13861175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 17282789 - 17282829
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  17282789 attcacgacaccggcagtcaccttctgatcaggtactatca 17282829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 25239595 - 25239555
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  25239595 attcacgacactggcagtcaccttctgatcaggtacgatca 25239555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 56581820 - 56581780
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  56581820 attcacgacaccagcagtcaccttctgatcaggtacgatca 56581780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 10421948 - 10421907
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  10421948 attcacgacaccggcagtcacattgtgatcaggtacgatcaa 10421907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 10271531 - 10271499
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  10271531 caccggcagtcaccttctgatcaggtacgatca 10271499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 18284824 - 18284864
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  18284824 attcacgacaccgacagtcaccttctaatcaggtacgatca 18284864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 26781103 - 26781143
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaaatatatt 70  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  26781103 caccgacagtcaccttctgatcaggtacgatcacatatatt 26781143  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 8081937 - 8081904
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||||||||||| ||||||||||||||||||    
T  8081937 caccggcagtcacctactgatcaggtacgatcaa 8081904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 10282249 - 10282221
Alignment:
Q  34 ggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||    
T  10282249 ggcagtcaccttctgatcaggtacgatca 10282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 27347071 - 27347031
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27347071 attcacgacaccggcagtcaccttctgatcaggtacgatca 27347031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 21148723 - 21148683
Alignment:
Q  23 ttcacgacaccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  21148723 ttcacgacaccggcagtcaccttcttatcaggtacgatcaa 21148683  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 22453121 - 22453154
Alignment:
Q  29 acaccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||||||||||||||||||||||||||||||||    
T  22453121 acaccggcagtcaccttctgatcaggtacgatca 22453154  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 3770151 - 3770118
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||||| ||||||||||||||||||||||||    
T  3770151 caccggcagccaccttctgatcaggtacgatcaa 3770118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 47295977 - 47296018
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  47295977 attcacgacaccggcagtcaccttctgatcatgtacgatcaa 47296018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 2250300 - 2250334
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaaa 64  Q
    |||||||||||||||||||||||||||||||||||    
T  2250300 caccggcagtcaccttctgatcaggtacgatcaaa 2250334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 18153029 - 18152987
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaaa 64  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  18153029 attcacgacaccggcagtcgccttctgatcaggtaagatcaaa 18152987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 18185525 - 18185485
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  18185525 attcacgacaccggtagtcaccttctgatcatgtacgatca 18185485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 29164741 - 29164707
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaaa 64  Q
    |||| ||||||||||||||||||||||||||||||    
T  29164741 cacccgcagtcaccttctgatcaggtacgatcaaa 29164707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 9549281 - 9549310
Alignment:
Q  33 cggcagtcaccttctgatcaggtacgatca 62  Q
    ||||||||||||||||||||||||||||||    
T  9549281 cggcagtcaccttctgatcaggtacgatca 9549310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 24786831 - 24786872
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaaatatattc 71  Q
    ||||| |||||||||||| ||||||||||||||| |||||||    
T  24786831 caccgacagtcaccttctaatcaggtacgatcaattatattc 24786872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 5643858 - 5643826
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||| |||||||||||||||||||||||||||    
T  5643858 caccgacagtcaccttctgatcaggtacgatca 5643826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 5649710 - 5649678
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||| |||||||||||||||||||||||||||    
T  5649710 caccgacagtcaccttctgatcaggtacgatca 5649678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 31530893 - 31530934
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatcaa 63  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  31530893 attcacgacaccggcagtcaccttctaatcaggtacgatcaa 31530934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 19773278 - 19773246
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  19773278 caccggcagtcaccttctgatcaggtacgatca 19773246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 8733274 - 8733244
Alignment:
Q  32 ccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||    
T  8733274 ccggcagtcaccttctgatcaggtacgatca 8733244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 9085515 - 9085485
Alignment:
Q  32 ccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||    
T  9085515 ccggcagtcaccttctgatcaggtacgatca 9085485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 22914944 - 22914912
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||| |||||||||||||||||||||||||||    
T  22914944 caccgacagtcaccttctgatcaggtacgatca 22914912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 54832 - 54872
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  54832 attcacgacaccggcagtcaccttctgatcaggttcgatca 54872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 15120027 - 15120061
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaaa 64  Q
    ||||||||||||||||||||| |||||||||||||    
T  15120027 caccggcagtcaccttctgattaggtacgatcaaa 15120061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 3876222 - 3876189
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaa 63  Q
    |||||||| |||||||||||||||||||||||||    
T  3876222 caccggcattcaccttctgatcaggtacgatcaa 3876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 8305954 - 8305921
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||| ||||||||||||||||||||||||||||    
T  8305954 caccgacagtcaccttctgatcaggtacgatcaa 8305921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 15319286 - 15319319
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaa 63  Q
    |||||||||| |||||||||||||||||||||||    
T  15319286 caccggcagttaccttctgatcaggtacgatcaa 15319319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 18043231 - 18043199
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||| ||||||||||||||||||||||||    
T  18043231 caccggcaatcaccttctgatcaggtacgatca 18043199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 19860359 - 19860391
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||| ||||||||||||||||||||||||    
T  19860359 caccggcaatcaccttctgatcaggtacgatca 19860391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 24438883 - 24438915
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||| |||||||||||||||||||||||||||    
T  24438883 caccgacagtcaccttctgatcaggtacgatca 24438915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 4504 - 4537
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaa 63  Q
    ||||| ||||||||||||||||||||||||||||    
T  4504 caccgacagtcaccttctgatcaggtacgatcaa 4537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 47725 - 47758
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatcaa 63  Q
    |||| |||||||||||||||||||||||||||||    
T  47725 caccagcagtcaccttctgatcaggtacgatcaa 47758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 7648 - 7688
Alignment:
Q  22 attcacgacaccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||| |||||||| ||||||||| ||||||||||||||||    
T  7648 attcaagacaccggtagtcaccttatgatcaggtacgatca 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 37086 - 37118
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    ||||| |||||||||||||||||||||||||||    
T  37086 caccgacagtcaccttctgatcaggtacgatca 37118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 86670 - 86702
Alignment:
Q  30 caccggcagtcaccttctgatcaggtacgatca 62  Q
    |||||||||| ||||||||||||||||||||||    
T  86670 caccggcagtaaccttctgatcaggtacgatca 86702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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