View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_31 (Length: 269)
Name: NF13338_low_31
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 7907105 - 7907340
Alignment:
| Q |
16 |
aaaataacgattcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
115 |
Q |
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| T |
7907105 |
aaaataacgattcttgataaaaatcaatgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
7907204 |
T |
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| Q |
116 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7907205 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
7907304 |
T |
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| Q |
216 |
caacaactgcaatggcaaacctttggagctcacccc |
251 |
Q |
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| T |
7907305 |
caacaactgcaatggcaaacctttggagctcacccc |
7907340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 8001242 - 8001007
Alignment:
| Q |
16 |
aaaataacgattcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
115 |
Q |
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| T |
8001242 |
aaaataacgattcttgataaaaatcaatgacaaatcacatagtgatatcatcaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
8001143 |
T |
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| Q |
116 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
215 |
Q |
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| T |
8001142 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
8001043 |
T |
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| Q |
216 |
caacaactgcaatggcaaacctttggagctcacccc |
251 |
Q |
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| T |
8001042 |
caacaactgcaatggcaaacctttggagctcacccc |
8001007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 51516531 - 51516308
Alignment:
| Q |
27 |
tcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggcctgagcaatga |
126 |
Q |
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|||||| ||||||||| |||| ||||||||||||||| ||| | |||||||||| ||||| |||||| ||| |||||||||||||||||||||||| |
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| T |
51516531 |
tcttgacaaaaatcaatgacagtgcacatagtgatatcacaaatatataaagcagaagctacagaggaaattaaa-aaacctattaggcctgagcaatga |
51516433 |
T |
|
| Q |
127 |
ccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgca |
226 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51516432 |
tcgaacaacttgggcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgca |
51516333 |
T |
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| Q |
227 |
atggcaaacctttggagctcacccc |
251 |
Q |
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| T |
51516332 |
atggcaaacctttggagctcacccc |
51516308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 53 - 251
Target Start/End: Original strand, 1302544 - 1302743
Alignment:
| Q |
53 |
catagtgatatcaacaatgtttaaagcagaaactacaaagg-aaaggaaacaaacctattaggcctgagcaatgaccgaacaacttgcgcagctttcagc |
151 |
Q |
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||||||||||| ||||| |||||||||||| ||||| | ||| ||||| |||||||| |||| ||||||||||| |||||||| |||||||||||| |
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| T |
1302544 |
catagtgatattgacaatatttaaagcagaagctacagatataaaataaacagacctattatgccttagcaatgaccggacaacttgggcagctttcagc |
1302643 |
T |
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| Q |
152 |
ctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgcaatggcaaacctttggagctcacccc |
251 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||| |
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| T |
1302644 |
ctctgtttcacatcaagataactagaaggttcatcaaacatgtatatctccgcattttggatggcaatacctgcaatggcaaacctttgaagctcacccc |
1302743 |
T |
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