View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_34 (Length: 239)
Name: NF13338_low_34
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 31003485 - 31003269
Alignment:
| Q |
17 |
cattatcttcaccaattatgcaactatatgattctactaaagattgataagaaaatgctcataatgctaaatatatactgcacttttgctgatatgatca |
116 |
Q |
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| T |
31003485 |
cattatcttcaccaattatgcaactatatgcttctactaaacattgataagaaaatgctcataatgctacatatatactgcacttttgctgatatgatca |
31003386 |
T |
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| Q |
117 |
aattgctgaatgtaaagtacaaattcatccttcaaagagcatttcagtcacagttttacaacattttacaatgttactcatctaaatacgtttttacaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31003385 |
aattgctgaatgtaaagtacaaattcatccttcaaagagcatttcagtcacagttttacaacattttacaatgttactcatctaaatacgtttttacaaa |
31003286 |
T |
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| Q |
217 |
caattacaatattcttc |
233 |
Q |
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||||||||||||||||| |
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| T |
31003285 |
caattacaatattcttc |
31003269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 31000294 - 31000113
Alignment:
| Q |
48 |
ttctactaaagattgataagaaaatgctcataatgctaaatatatactgcacttttgctgatatgatcaaattgctgaatgtaa-agtacaaattcatcc |
146 |
Q |
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| T |
31000294 |
ttctattaaacattgataagaaaatactcataatgttacatatatagtgcacttt-gctgatatgatcaattt----aatgtaagagtacaaatccatcc |
31000200 |
T |
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| Q |
147 |
ttcaaagagcatttcagtcacagttttacaacattttacaatgttactcatctaaatacgtttttacaaacaattacaatattcttc |
233 |
Q |
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| T |
31000199 |
atcaaagagcatttcagtcacagttttatgacattttacaaagttacttgtctaaatacattcttacaaacaattacaatatccttc |
31000113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 30993205 - 30993071
Alignment:
| Q |
100 |
ttttgctgatatgatcaaattgctgaatgtaa-agtacaaattcatccttcaaagagcatttcagtcacagttttacaacattttacaatgttactcatc |
198 |
Q |
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|||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
30993205 |
tttttctgatatgatcaatttgctgaatgtatgagtacaaattcatccatcaaagagcatttcagtcacagttttatgacattttacaatgttacttgtc |
30993106 |
T |
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| Q |
199 |
taaatacgtttttacaaacaattacaatattcttc |
233 |
Q |
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||||||| || ||||||||||||||||||| |||| |
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| T |
30993105 |
taaatacattcttacaaacaattacaatatccttc |
30993071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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