View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_5 (Length: 588)
Name: NF13338_low_5
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Original strand, 40170303 - 40170869
Alignment:
| Q |
20 |
ctctcgccgacgttaccaataacagaaatgcctctctcgtcaaaacttcccttgctgttccatccaagcccatggtaatgatactattataat---ttac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||||| |||| |
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| T |
40170303 |
ctctcgccgacgttaccaataacagaaatgcctctctcgtcaaaacctcccttgctgctccatataagcccatggtaatgatactgttataatcatttac |
40170402 |
T |
|
| Q |
117 |
tactatcactcaatttgagtttgtgttgtgattgg---------aacgctgaatttgattagtttggttctgtttagtaatactgaacaatcttagtgat |
207 |
Q |
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| T |
40170403 |
tactattactcaatttgagtttgtgttgtgattagtgttatggcaacgctgaatttgattagtttggttctttttattaacactgagcaatcttagtgaa |
40170502 |
T |
|
| Q |
208 |
tttgcttatgaataattaaagattgttcgaatcatgacgggatagtgttgcgtaataatgaaagtgtatcttgaaattgtgttgatgaagcacgagaatg |
307 |
Q |
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| T |
40170503 |
tttgcttatgactaattaaagattgtttgaattatgattggatagtgttgcgtaataatggaagtgtatcttggaattgtgttgatgaagcacgagaatg |
40170602 |
T |
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| Q |
308 |
atataacaacatgcatggtttcatttaacatata-gtgtcttcacctttttgaggattattttatcaaaatcattaggacccaccatatatgctatgcat |
406 |
Q |
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| T |
40170603 |
atataataacatgcatggtttaatttaacatatatgtgtgttcacc-ttttgaggattattttatcaaaatcattaggacccaccatatattctatgcat |
40170701 |
T |
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| Q |
407 |
gtggaacttctgcaaataaagttgaacaatacaaaacaatggacaagtgtttggttttaagtgggaaagtatacaatgag-tttaattgatatgcattat |
505 |
Q |
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| T |
40170702 |
gtggaacttttgcaaataaagttgaacaatacaaaacaatgaacaagtgtttggttttaagtgggaaagtatataatgagttttaattgatatgcattat |
40170801 |
T |
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| Q |
506 |
tggtgtaaaaaagttttacacatgcattcgattacattttat--cgctcagatatttgaggagatatt |
571 |
Q |
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| T |
40170802 |
cggcctataaaagttttacacatgcattcagtcacattttatcgcgctcagatatttgaggagatatt |
40170869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 36480121 - 36480073
Alignment:
| Q |
484 |
gagtttaattgatatgcattattggtgtaaaaaagttttacacatgcat |
532 |
Q |
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| T |
36480121 |
gagtttaattgatatgcattgtcggtgtaaacaagttttacacatgcat |
36480073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 8279625 - 8279576
Alignment:
| Q |
483 |
tgagtttaattgatatgcattattggtgtaaaaaagttttacacatgcat |
532 |
Q |
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| T |
8279625 |
tgagtttaattcatatacactgttggtgtaaaaaagttttacacatgcat |
8279576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 20996421 - 20996368
Alignment:
| Q |
479 |
acaatgagtttaattgatatgcattattggtgtaaaaaagttttacacatgcat |
532 |
Q |
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| T |
20996421 |
acaatgagtttaattgatatgcatattaagtgtaaaaaagttttatacaagcat |
20996368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 537
Target Start/End: Original strand, 18637438 - 18637491
Alignment:
| Q |
484 |
gagtttaattgatatgcattattggtgtaaaaaagttttacacatgcattcgat |
537 |
Q |
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| T |
18637438 |
gagtttaattgatatgcattgtcagtgtaaagaagttttacatatgcatacgat |
18637491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 28479117 - 28479165
Alignment:
| Q |
484 |
gagtttaattgatatgcattattggtgtaaaaaagttttacacatgcat |
532 |
Q |
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| T |
28479117 |
gagtttaattgatattcaccgtcggtgtaaaaaagttttacacatgcat |
28479165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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