View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_8 (Length: 522)
Name: NF13338_low_8
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 24 - 504
Target Start/End: Complemental strand, 20103468 - 20102988
Alignment:
| Q |
24 |
cttcttattggcttaagttctctcttcgtagccattgttgccatgttcatttctttcattggtggacactactttgtgctcacagataaatataccaaga |
123 |
Q |
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| T |
20103468 |
cttctttttgggtttagttctctcttcgtagccattgttgccatgttcatttgtttcattggtggacactactttgtgctcacagataaatataccaaga |
20103369 |
T |
|
| Q |
124 |
gtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgagcattttccgttatatattgatcttctcaaagttatttt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20103368 |
gtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgagcattttccgttatatattgatcttctcaaagttatttt |
20103269 |
T |
|
| Q |
224 |
gaagaaggtgccaccaccaagtatcaagggtgttaagttgtagaggtgtttattttattgtattgctttgtggattgaaactcatgagtttggtttgtac |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20103268 |
gaagaaggtgccaccaccaagtatcaagggtgttaagttgtagaggtgtttattttattgtattgctttgtggattgaaactaatgagtttggtttgtac |
20103169 |
T |
|
| Q |
324 |
ttgaataatgtgttctgtgtttattatgtttagggtactggtatgattatagtgtgatttgactctttttgtatcattataaggtgtgatgaggattata |
423 |
Q |
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| T |
20103168 |
ttgaataaggagttctgtgtttattatgtttagggtactggtatgattgtagtgtgatttgactctttttgtatcattataaggtgtgatgaggattata |
20103069 |
T |
|
| Q |
424 |
tgaattttgtcgtatctaaattatgagttttgtatctcaagagtgatttgggtggagagatatgggagaatgagataaatt |
504 |
Q |
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| T |
20103068 |
tgaattttgtcgtatctaaattatgagttttgtatctcaagagtgatttggatggagagatatgggagaatgagataaatt |
20102988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 325
Target Start/End: Complemental strand, 20079151 - 20078850
Alignment:
| Q |
24 |
cttcttattggcttaagttctctcttcgtagccattgttgccatgttcatttctttcattggtggacactactttgtgctcacagataaatataccaaga |
123 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20079151 |
cttctttttgggttaagttctctcttcgtagccattgttgccatgttcatttctttcattgctggacactactttgtgctcacagataaatataccaaga |
20079052 |
T |
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| Q |
124 |
gtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgagcattttccgttatatattgatcttctcaaagttatttt |
223 |
Q |
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| T |
20079051 |
gtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatggagttgtccagtttccattatatcttgatcttgtcaaagttacttg |
20078952 |
T |
|
| Q |
224 |
gaagaaggtgccaccaccaagtatcaagggtgttaagttgtagaggtgtttattttattgtattgctttgtggattgaaactcatgagtttggtttgtac |
323 |
Q |
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| T |
20078951 |
gaggaaggtgccaccaccaagtatcaagggtgttaagctgtaaaggtgtttattttattgtattgctttgtggattgaaactcatgagtttggtttgtac |
20078852 |
T |
|
| Q |
324 |
tt |
325 |
Q |
| |
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|| |
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| T |
20078851 |
tt |
20078850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 108 - 431
Target Start/End: Complemental strand, 20130604 - 20130271
Alignment:
| Q |
108 |
gataaatataccaagagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgagcattttccgttatatattgatc |
207 |
Q |
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||||||||||||| | |||||||||| |||||||||||| || ||||||||||||| |||| |||||||| ||| || |||| ||||||| |||||| |
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| T |
20130604 |
gataaatataccatgggtggtatcttattctatttatatgttctcatttgcttgcctgtcactctctatgcacttgttcagtttcggttatatgttgatc |
20130505 |
T |
|
| Q |
208 |
ttctcaaagttattttgaagaaggtgccaccaccaagtatcaagggtgttaagttgtagaggtgtttattttattgtattgctttgtggattgaaactca |
307 |
Q |
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| T |
20130504 |
ttgttaaagttctttggaagaaggtgccaccaccaagtattaagggtgttaagttgtagaagtgtttatttaattgtattgctgtgtggattgaaactta |
20130405 |
T |
|
| Q |
308 |
tgagtttggtttgtacttgaataatgtg--ttctgtgtttattatgtttagggtac--------tggtatgattatagtgtgatttgactctttttgtat |
397 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||| | |||| |||| ||| | ||||||||||||||||| ||||||| |
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| T |
20130404 |
tgagtttggtttgtacttgaataatgtgtcttgtgtgtttattatgtttggagtactggccgtgtggtgtgaatgtagtgtgatttgactctatttgtat |
20130305 |
T |
|
| Q |
398 |
cattataaggtgtgatgaggattatatgaatttt |
431 |
Q |
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|||||||||||||||| || || ||||||||||| |
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| T |
20130304 |
cattataaggtgtgataagaatgatatgaatttt |
20130271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 281 - 424
Target Start/End: Original strand, 19904158 - 19904311
Alignment:
| Q |
281 |
ttgtattgctttgtggattgaaactcatgagtttggtttgtacttgaataatgtg--ttctgtgtttattatgtttagggtac--------tggtatgat |
370 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| | |||| |||| ||| |
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| T |
19904158 |
ttgtattgctgtgtggattgaaacttatgagtttggtttgtacttgaataatgtgtcttgtgtgtttattatgtttggagtactggccgtgtggtgtgaa |
19904257 |
T |
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| Q |
371 |
tatagtgtgatttgactctttttgtatcattataaggtgtgatgaggattatat |
424 |
Q |
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| T |
19904258 |
tgtagtgtgatttgactctatttgtatcattataaggtgtgataaggattatat |
19904311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 20078834 - 20078717
Alignment:
| Q |
310 |
agtttggtttgtacttgaataatgtgttctgtgtttattatgtttagggtactggtatgattatagtgtgatttgactctttttgtatcattataaggtg |
409 |
Q |
| |
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|||||| ||||||||||| ||||||||| |||||||||||||||||| |||||| ||||||| | ||| |||||||| | ||||||||||||||||||| |
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| T |
20078834 |
agtttgttttgtacttgagtaatgtgttgtgtgtttattatgtttagagtactgatatgattgtcttgtaatttgactatgtttgtatcattataaggtg |
20078735 |
T |
|
| Q |
410 |
tgatgaggattatatgaa |
427 |
Q |
| |
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|||| ||||||||||||| |
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| T |
20078734 |
tgataaggattatatgaa |
20078717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 20078689 - 20078642
Alignment:
| Q |
436 |
tatctaaattatgagttttgtatctcaagagtgatttgggtggagaga |
483 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| |||||||||||| |
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| T |
20078689 |
tatctaaattatgagttttgtatctagagattgatgtgggtggagaga |
20078642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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