View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_low_9 (Length: 509)
Name: NF13338_low_9
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 15 - 509
Target Start/End: Complemental strand, 2838213 - 2837719
Alignment:
| Q |
15 |
tcacatcttaatttattgagtttattccaaatacaagagtttttgcatattattcctcacaagactaacaccaataaacaaacttattaactacattaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838213 |
tcacatcttaatttattgagtttattccaaatacaagagtttttgcatattattcctcacaagactaacaccaataaacaaacttattaactacattaat |
2838114 |
T |
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| Q |
115 |
ttaattaatttgcttaatataacaaacacaaaactataaactaattgaaccatgctatgcaaccttcatttcacttcatcgttttaaattgcggtctgcg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2838113 |
ttaattaatttgcttaatataacaaacacaaaactataaactaattgaaccatgctatgcaaccttcatttcacttcatcgttttaaaatgcggtctgcg |
2838014 |
T |
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| Q |
215 |
actgcactgtagcaacgatgtaaacatttcacaggtctccacaacatcatcataattcgtaactgcaattatggtcgcatttgtcctcaatttcctgcaa |
314 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838013 |
gctgcactgtagcaatgatgtaaacatgccacaggtctccacaacatcatcctaattcgtaactgcaattatggtcgcatttgtcctcaatttcctgcaa |
2837914 |
T |
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| Q |
315 |
tatcaaggatcgcgattcagctgtaagtgtaaccagccaccgcaatttaaaaccatatttattttcaagacatagatttcctccacctattaggagtcct |
414 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2837913 |
tatcaaggatcgcgattcagccgtaagtgtaaccagccaccgcaatttaaaaccatatttattttcaagacatagatttcctccacctattaggagtcct |
2837814 |
T |
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| Q |
415 |
acctttgacattcaccaacctagttttcatatcagaagtagtagcaggtgtctgtcttccaaactcaaccccaccatctccatcaacaccttctc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2837813 |
acctttgacattcaccaacctagttttcatatcagaagtagtagcaggtgtctgtcttccaaactcaacctcaccatctccatcaacaccttctc |
2837719 |
T |
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