View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13339_high_1 (Length: 584)

Name: NF13339_high_1
Description: NF13339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13339_high_1
NF13339_high_1
[»] chr5 (9 HSPs)
chr5 (17-363)||(23224072-23224431)
chr5 (375-574)||(23223835-23224034)
chr5 (467-530)||(23223879-23223942)
chr5 (496-551)||(18728941-18728996)
chr5 (444-502)||(7963269-7963327)
chr5 (497-555)||(12124613-12124671)
chr5 (507-552)||(12124815-12124860)
chr5 (518-554)||(34397228-34397264)
chr5 (448-500)||(42479933-42479985)
[»] chr4 (5 HSPs)
chr4 (497-553)||(2604125-2604181)
chr4 (496-554)||(5244633-5244691)
chr4 (500-555)||(11444836-11444891)
chr4 (500-555)||(11548234-11548289)
chr4 (442-484)||(37709953-37709995)
[»] chr8 (8 HSPs)
chr8 (504-556)||(38201919-38201971)
chr8 (505-552)||(33435345-33435392)
chr8 (444-490)||(45386504-45386550)
chr8 (497-553)||(38202106-38202163)
chr8 (513-554)||(41395716-41395757)
chr8 (445-485)||(34310458-34310498)
chr8 (508-552)||(36110559-36110603)
chr8 (519-555)||(36203462-36203498)
[»] chr2 (6 HSPs)
chr2 (500-552)||(26632415-26632467)
chr2 (444-502)||(14442018-14442076)
chr2 (444-478)||(23466002-23466036)
chr2 (447-484)||(4091499-4091536)
chr2 (453-490)||(19895046-19895083)
chr2 (444-484)||(30481817-30481857)
[»] chr7 (4 HSPs)
chr7 (496-552)||(33342926-33342982)
chr7 (444-478)||(101419-101453)
chr7 (447-479)||(30279060-30279092)
chr7 (444-484)||(35851907-35851947)
[»] scaffold0110 (1 HSPs)
scaffold0110 (444-484)||(31308-31348)
[»] chr6 (2 HSPs)
chr6 (496-555)||(9993017-9993076)
chr6 (444-481)||(17145947-17145984)
[»] chr3 (3 HSPs)
chr3 (444-479)||(6588237-6588272)
chr3 (510-553)||(25258189-25258232)
chr3 (501-553)||(25257981-25258033)
[»] chr1 (6 HSPs)
chr1 (444-479)||(31847318-31847353)
chr1 (497-554)||(5759965-5760022)
chr1 (508-545)||(17919114-17919151)
chr1 (489-530)||(27678478-27678519)
chr1 (513-545)||(9450328-9450360)
chr1 (444-484)||(15691904-15691944)
[»] scaffold0471 (1 HSPs)
scaffold0471 (508-552)||(427-471)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 23224431 - 23224072
Alignment:
Q  17 atcataatgtattctaaaactccaacttaaaagacacatcttacc---------------aataaacttgtcaaatnnnnnnnttatatggggtagatga 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||               ||||||||||||||||       |||||||||||||||||    
T  23224431 atcataatgtattctaaaactctaacttaaaagacacatcttaccgaatactaccaatataataaacttgtcaaataaaaaaattatatggggtagatga 23224332  T
Q  102 ttacttgactcatttagaaaacaattacacaatatatgactaacattgtagtttctatttgtttataaataaataaatcattgttccagcaactggactt 201  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23224331 ttacttgactcatttagaaaacaattacacaatatatgacaaacattgtagtttctatttgtttataaataaataaatcattgttccaacaactggactt 23224232  T
Q  202 caagtagcaaactttaaaagccgccatattggaagctaaagcacatactttagtatataaagtttaaatttagaatttaatttcacattgtcnnnnnnnn 301  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||            
T  23224231 caagtagctaactttaaaagccgccatatttgaagctaaagcacattctttagtatataaagtttaaattttgaatttaatttcacattgtcaaaaaaaa 23224132  T
Q  302 ntattcaacaacttcacatgaatacctccaagaaatttctcaacagcataagaaactaagca 363  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23224131 --attcaacaacttcacatgaatacctccaagaaatttctcaacagcataagaaactaagca 23224072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 375 - 574
Target Start/End: Complemental strand, 23224034 - 23223835
Alignment:
Q  375 actaacaagaggcaaaagtccctatactgctatgactaaattgtttagtattgctagaatttggtttacgaaaattgctcttctccctttcaaaattgtt 474  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23224034 actaagaagaggcaaaagtccctatactgctataactaaattgtttagtattgctagaatttggtttacgaaaattgctcttgtccctttcaaaattgtt 23223935  T
Q  475 cattctcttatatcagcggcggttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttcttggtttacactaggcctttg 574  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23223934 cattctcttatatcagcgacggttaactgtcgctgatataagggaatgagcaatttcataagtgagaagagtatttttcttggtttacagtaggcctttg 23223835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 530
Target Start/End: Original strand, 23223879 - 23223942
Alignment:
Q  467 aaattgttcattctcttatatcagcggcggttaactgtcgctgatataagggaatgaacaattt 530  Q
    |||||| |||||| |||||||||||| | |||||| |||||||||||||| |||||||||||||    
T  23223879 aaattgctcattcccttatatcagcgacagttaaccgtcgctgatataagagaatgaacaattt 23223942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 551
Target Start/End: Original strand, 18728941 - 18728996
Alignment:
Q  496 gttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttt 551  Q
    |||||||| |||||||||||| |||||| ||||||||||| |||| ||||||||||    
T  18728941 gttaactgccgctgatataagagaatgatcaatttcataaatgagtagagtatttt 18728996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 502
Target Start/End: Complemental strand, 7963327 - 7963269
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattctcttatatcagcggcggttaact 502  Q
    ||||||||||||| | ||||||||||||| |||||||||||||| |||||  |||||||    
T  7963327 gaaaattgctcttattcctttcaaaattgatcattctcttatataagcggaagttaact 7963269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 555
Target Start/End: Complemental strand, 12124671 - 12124613
Alignment:
Q  497 ttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttctt 555  Q
    |||||||  ||||||||||||||||||  |||||||||||| ||||||||| |||||||    
T  12124671 ttaactgctgctgatataagggaatgagaaatttcataagttagaagagtaattttctt 12124613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 552
Target Start/End: Original strand, 12124815 - 12124860
Alignment:
Q  507 ctgatataagggaatgaacaatttcataagtgagaagagtattttt 552  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||    
T  12124815 ctgatataaaggaatgaacaatttcacaagtgagaagagtaatttt 12124860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 554
Target Start/End: Original strand, 34397228 - 34397264
Alignment:
Q  518 gaatgaacaatttcataagtgagaagagtatttttct 554  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  34397228 gaatgaacaatttcatatgtgagaagagtaattttct 34397264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 500
Target Start/End: Original strand, 42479933 - 42479985
Alignment:
Q  448 attgctcttctccctttcaaaattgttcattctcttatatcagcggcggttaa 500  Q
    |||| |||||||| ||| |||||||||||||||||||| ||||| | ||||||    
T  42479933 attgttcttctcctttttaaaattgttcattctcttatctcagcagaggttaa 42479985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 497 - 553
Target Start/End: Original strand, 2604125 - 2604181
Alignment:
Q  497 ttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttc 553  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  2604125 ttaactctcgctgatataagggaatgagcaatttcataagtgagaaaagtatttttc 2604181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 5244633 - 5244691
Alignment:
Q  496 gttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttct 554  Q
    |||||||| | |||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  5244633 gttaactgcctctgatataagggaatgaataatttcacaagtgagaagagtaattttct 5244691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 555
Target Start/End: Complemental strand, 11444891 - 11444836
Alignment:
Q  500 actgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttctt 555  Q
    |||| |||| ||||||||||||||  |||||||||||||||| ||||| |||||||    
T  11444891 actgccgctaatataagggaatgaggaatttcataagtgagatgagtaattttctt 11444836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 555
Target Start/End: Original strand, 11548234 - 11548289
Alignment:
Q  500 actgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttctt 555  Q
    |||| |||||||||||||||||||  |||||||||| ||||| ||||| |||||||    
T  11548234 actgccgctgatataagggaatgaggaatttcataactgagatgagtaattttctt 11548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 37709995 - 37709953
Alignment:
Q  442 acgaaaattgctcttctccctttcaaaattgttcattctctta 484  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  37709995 acgaaaattgctcttctccctttgaaaattgctcattccctta 37709953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 38201971 - 38201919
Alignment:
Q  504 tcgctgatataagggaatgaacaatttcataagtgagaagagtatttttcttg 556  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  38201971 tcgctaatataagggaatgaacaatttcataagtgaaaagagtaattttcttg 38201919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 552
Target Start/End: Complemental strand, 33435392 - 33435345
Alignment:
Q  505 cgctgatataagggaatgaacaatttcataagtgagaagagtattttt 552  Q
    |||| ||||||| |||| ||||||||||||||||||||||||| ||||    
T  33435392 cgctaatataagagaataaacaatttcataagtgagaagagtaatttt 33435345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 45386550 - 45386504
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattctcttatatcag 490  Q
    |||||||| | |||||||||||||||||| |||||||||||| ||||    
T  45386550 gaaaattgattttctccctttcaaaattgctcattctcttatctcag 45386504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 553
Target Start/End: Original strand, 38202106 - 38202163
Alignment:
Q  497 ttaactgtcgctgatataagggaatgaacaa-tttcataagtgagaagagtatttttc 553  Q
    ||||||||||||| || | |||||||||||| ||||||| |||||||||||| |||||    
T  38202106 ttaactgtcgctgctaaaggggaatgaacaattttcatacgtgagaagagtaattttc 38202163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 554
Target Start/End: Original strand, 41395716 - 41395757
Alignment:
Q  513 taagggaatgaacaatttcataagtgagaagagtatttttct 554  Q
    |||||||||||| |||||||||||||||||||| | ||||||    
T  41395716 taagggaatgaagaatttcataagtgagaagagcaattttct 41395757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 485
Target Start/End: Complemental strand, 34310498 - 34310458
Alignment:
Q  445 aaaattgctcttctccctttcaaaattgttcattctcttat 485  Q
    |||| |||||||||||||||||||||| ||||||| |||||    
T  34310498 aaaagtgctcttctccctttcaaaattattcattcccttat 34310458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 36110603 - 36110559
Alignment:
Q  508 tgatataagggaatgaacaatttcataagtgagaagagtattttt 552  Q
    |||||||||||||||| ||||||||||  ||||||||||| ||||    
T  36110603 tgatataagggaatgagcaatttcatagatgagaagagtaatttt 36110559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 555
Target Start/End: Original strand, 36203462 - 36203498
Alignment:
Q  519 aatgaacaatttcataagtgagaagagtatttttctt 555  Q
    |||||||||||||||||||||||||| || |||||||    
T  36203462 aatgaacaatttcataagtgagaagaataattttctt 36203498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 500 - 552
Target Start/End: Original strand, 26632415 - 26632467
Alignment:
Q  500 actgtcgctgatataagggaatgaacaatttcataagtgagaagagtattttt 552  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  26632415 actgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 26632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 14442018 - 14442076
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattctcttatatcagcggcggttaact 502  Q
    ||||||||||||||||||||||||||||  |||||||||||  |||||||  |||||||    
T  14442018 gaaaattgctcttctccctttcaaaattactcattctcttaactcagcggaagttaact 14442076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 23466036 - 23466002
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcatt 478  Q
    ||||||||||||||||| |||||||||||||||||    
T  23466036 gaaaattgctcttctccttttcaaaattgttcatt 23466002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 484
Target Start/End: Complemental strand, 4091536 - 4091499
Alignment:
Q  447 aattgctcttctccctttcaaaattgttcattctctta 484  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  4091536 aattgctcttctcccttttaaaattgttcattccctta 4091499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 490
Target Start/End: Complemental strand, 19895083 - 19895046
Alignment:
Q  453 tcttctccctttcaaaattgttcattctcttatatcag 490  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  19895083 tcttctccctttcaaaattgttcattcccttatttcag 19895046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 30481857 - 30481817
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattctctta 484  Q
    ||||||||||||||||||| |||||||| ||||||| ||||    
T  30481857 gaaaattgctcttctccctctcaaaattattcattccctta 30481817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 552
Target Start/End: Original strand, 33342926 - 33342982
Alignment:
Q  496 gttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtattttt 552  Q
    ||||| ||||||||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  33342926 gttaattgtcgctgatataagagaatgagcaattccataagtgagaagagtaatttt 33342982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 101453 - 101419
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcatt 478  Q
    |||||||||||||||||||||||||||||||||||    
T  101453 gaaaattgctcttctccctttcaaaattgttcatt 101419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 479
Target Start/End: Original strand, 30279060 - 30279092
Alignment:
Q  447 aattgctcttctccctttcaaaattgttcattc 479  Q
    |||||||||||||||||||||||||| ||||||    
T  30279060 aattgctcttctccctttcaaaattgctcattc 30279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 35851907 - 35851947
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattctctta 484  Q
    |||||||||||||||| |||||||||||| |||||| ||||    
T  35851907 gaaaattgctcttctctctttcaaaattgctcattccctta 35851947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 31308 - 31348
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattctctta 484  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  31308 gaaaattgctcttcttcctttcaaaattgctcattctctta 31348  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 555
Target Start/End: Complemental strand, 9993076 - 9993017
Alignment:
Q  496 gttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttctt 555  Q
    |||||||| || || ||||||||||||| | ||| ||||||||||||||||| |||||||    
T  9993076 gttaactgccgttggtataagggaatgagccattccataagtgagaagagtaattttctt 9993017  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 481
Target Start/End: Original strand, 17145947 - 17145984
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattctc 481  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  17145947 gaaaattgctcttctccatttcaaaattgctcattctc 17145984  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 6588237 - 6588272
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattc 479  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6588237 gaaaattcctcttctccctttcaaaattgttcattc 6588272  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 553
Target Start/End: Original strand, 25258189 - 25258232
Alignment:
Q  510 atataagggaatgaacaatttcataagtgagaagagtatttttc 553  Q
    |||||||  ||||||||||||||||||||||||||||| |||||    
T  25258189 atataagaaaatgaacaatttcataagtgagaagagtaattttc 25258232  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 553
Target Start/End: Complemental strand, 25258033 - 25257981
Alignment:
Q  501 ctgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttc 553  Q
    ||||||||||||||||  |||||||||||| |||| | ||||||||| |||||    
T  25258033 ctgtcgctgatataagaaaatgaacaatttaataaataagaagagtaattttc 25257981  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 31847318 - 31847353
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattc 479  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31847318 gaaaattgctcttctccctttcaaaattgctcattc 31847353  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 554
Target Start/End: Complemental strand, 5760022 - 5759965
Alignment:
Q  497 ttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttct 554  Q
    ||||||| || |||||||||  |||||  |||||||||||||||||||||| ||||||    
T  5760022 ttaactgccgttgatataagataatgagtaatttcataagtgagaagagtaattttct 5759965  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 545
Target Start/End: Complemental strand, 17919151 - 17919114
Alignment:
Q  508 tgatataagggaatgaacaatttcataagtgagaagag 545  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  17919151 tgatataagggaataaacaatctcataagtgagaagag 17919114  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 530
Target Start/End: Complemental strand, 27678519 - 27678478
Alignment:
Q  489 agcggcggttaactgtcgctgatataagggaatgaacaattt 530  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  27678519 agcggcagttaactgtcgttgatataagggaatgatcaattt 27678478  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 545
Target Start/End: Original strand, 9450328 - 9450360
Alignment:
Q  513 taagggaatgaacaatttcataagtgagaagag 545  Q
    ||||||||||| |||||||||||||||||||||    
T  9450328 taagggaatgagcaatttcataagtgagaagag 9450360  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 15691904 - 15691944
Alignment:
Q  444 gaaaattgctcttctccctttcaaaattgttcattctctta 484  Q
    ||||||| |||||||||| |||||||||| |||||||||||    
T  15691904 gaaaattactcttctccccttcaaaattgatcattctctta 15691944  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 471 - 427
Alignment:
Q  508 tgatataagggaatgaacaatttcataagtgagaagagtattttt 552  Q
    |||||||||||||||| ||||||||||  ||||||||||| ||||    
T  471 tgatataagggaatgagcaatttcatagatgagaagagtaatttt 427  T

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