View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13339_low_2 (Length: 545)
Name: NF13339_low_2
Description: NF13339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13339_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 2467522 - 2468028
Alignment:
| Q |
18 |
aggatgagtgttat-ttaatttaggagggaaagagataacaaagcaaggtgaggtggttggttaatgtgacgcgggacttatccaagaaattggaaaaag |
116 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467522 |
aggatgagtgttatgttaatttaggagggaaagagataacaaagcaaggtgaggtggttggttaatgtgacgcgggacttatccaagaaattggaaaaat |
2467621 |
T |
|
| Q |
117 |
aaaaacagagagcgagctgcgaagcatagcatagcagagttgaagcaacgcagaagaaggaattagaaatgcaatcacactttttctcacattcgctcca |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467622 |
aaaaacagagagcgagctgcgaagca-----tagcagagttgaagcaacgcagaagaaggaattagaaatgcaatcacactttttctcacattcgctcca |
2467716 |
T |
|
| Q |
217 |
ttcgtttccaaaaccatttaagagccagcacttttcatctttcaccacctcacttatatcctcttccattttcccccctcctactcctcgctgcaatctc |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2467717 |
ttcgtttccaaaaccatttaagagccagcactttttatctttcaccacctcacttatatcctcttccatttttccccctcctactcctcgctgcaatctc |
2467816 |
T |
|
| Q |
317 |
aaattaccaccacgctttcaattcaccaacatttttcgggctacaacggtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctcaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467817 |
aaattaccaccacgctttcaattcaccaacatttttcggtctacaacggtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctcaa |
2467916 |
T |
|
| Q |
417 |
atttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgtg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467917 |
atttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgtg |
2468016 |
T |
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| Q |
517 |
tcttctgatgat |
528 |
Q |
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|||||||||||| |
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| T |
2468017 |
tcttctgatgat |
2468028 |
T |
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