View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13339_low_3 (Length: 427)
Name: NF13339_low_3
Description: NF13339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13339_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 2402686 - 2403099
Alignment:
| Q |
13 |
aaaataccgtcagatttaatcaagggtacaaagttcctaaaaataaaattgaaaatatgtgcatatgtccacacacaatcctgcctatatttcttcccaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| |
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| T |
2402686 |
aaaataccgtcagatttaatcaagggtacaaagttcctaaaaataaaattgaaaatatctacatatgtccacacacaatcctgcctgtatttcttcccaa |
2402785 |
T |
|
| Q |
113 |
ctcactgaaattctgcagtgaacggttgttttgcattcatctaattaacatataacatacacgtatgcagcatggaaacgatgtgatctggctcattgca |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
2402786 |
ctcactgaaattctgcagagaacggttgttttgcattcatctaattaacatataacatacacgtatgcaccatggaaacgatgtgatatggctcattgcc |
2402885 |
T |
|
| Q |
213 |
atctaaatttgactctataatcttccaatttatgcaatcatcaactaaaaagatgaaaattggtcgttgttggcgtgactttcattaaaacatgaatttt |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2402886 |
atctaaatttggctctataatcttccaatttatgcaatcatcaactaaaaagatgaaaattggtcgttgttggcgtgactttcattaaaacatgaatttt |
2402985 |
T |
|
| Q |
313 |
atttatatatgaataatttgattgatttcaaaacgtacaagtacttttataattccataaagatgatgtacattttatttgggttaaacgtatatttact |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2402986 |
atttatatatgaataatttgattgatttcaaaacgtataagtacttttataattccataaagatgatgtacattttatttgggttaaacgtatatttact |
2403085 |
T |
|
| Q |
413 |
ttttaatgaggttt |
426 |
Q |
| |
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|||||||||||||| |
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| T |
2403086 |
ttttaatgaggttt |
2403099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 39682369 - 39682762
Alignment:
| Q |
10 |
aagaaaataccgtcagatttaatcaagggtacaaagttcctaaaaataaaattgaaaatatgtgcatatgtccacacacaatcctgcctatatttcttcc |
109 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| |
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|
| T |
39682369 |
aagaaaataccctcagatttaatcaagg-tacaaagttcctaaaaataaaattgagaatatctacctatgtccacacacaatcctgcctatatttcttcc |
39682467 |
T |
|
| Q |
110 |
caactcactgaaattctgcagtgaacggttgttttgcattcatctaattaacatataacatacacgtatgcagcatggaaacgatgtgatctggctcatt |
209 |
Q |
| |
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| ||||||| ||||| ||||| ||||||||| ||| ||||||||||||| ||| | |||||| |||||||||||| || ||||||||| |
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| T |
39682468 |
cgactcactaaaattatgcagagaacggttgcttttcattcatctaattcaca-----------cttatgcataatggaaacgatgaaatatggctcatt |
39682556 |
T |
|
| Q |
210 |
gcaatctaaatttgactctataatcttccaatttatgcaatcatcaactaaaaagatgaaaattggtcgttgttggcgtgactttcattaaaacatgaat |
309 |
Q |
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| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
39682557 |
ggcatctaaatttgactccataatcttccaatttatgcaatcatcaactaaaaagatgaaaattggtcgttgttggcgtggc-ttcattaaaacatgaat |
39682655 |
T |
|
| Q |
310 |
tttatttatatatgaataatttgattgatttcaaaacgtacaagtacttttataattccataaagatgatgtacattttatttgggttaaacgtatattt |
409 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
39682656 |
tttatttatatatg---aatttgattgatttcaaaacatataagtacttt--taattccataaa---gatgtacattttctttgggttaaacgtatattt |
39682747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 2656482 - 2656100
Alignment:
| Q |
10 |
aagaaaataccgtcagatttaatcaagggtacaaagttcctaaaaataaaattgaaaatatgtgcatatgtccacacacaatcctgcctatatttcttcc |
109 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||| |
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|
| T |
2656482 |
aagaaaataccctcggatttaatcaagggtacaaagttcctgaaaataaaattgagaatatccacatatatccacacacaatcctggctatatttcttcc |
2656383 |
T |
|
| Q |
110 |
caactcactgaaattctgcagtgaacggttgttttgcattcatctaattaacatataacatacacgtatgcagcatggaaacgatgtgatctggctcatt |
209 |
Q |
| |
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| ||||||| ||||||||||| ||||||||| ||||||||||||||||||||| | |||||| ||||||||||||| ||| || ||||| |
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| T |
2656382 |
cgactcactaaaattctgcagagaacggttgctttgcattcatctaattaaca-----------cttatgcatcatggaaacgatgaaatccggttcatt |
2656294 |
T |
|
| Q |
210 |
gcaatctaaatttgactctataatcttccaatttatgcaatcatcaactaaaaagatgaaaattggtcgttgttggcgtgactttcattaaaacatgaat |
309 |
Q |
| |
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| ||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| ||| | ||||||||||||||||| |
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| T |
2656293 |
ggcatctaaatttggctccataatcttccaatttatgcaatcaaccactaaaaagatgaaaactggtcgttgttggtgtggc-ttcattaaaacatgaat |
2656195 |
T |
|
| Q |
310 |
tttatttatatatgaataatttgattgatttcaaaacgtacaagtacttttataattccataaagatgatgtacattttatttgggttaaacgtatattt |
409 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
2656194 |
tttatttatatatg---aatttgattgatttcaaaacatacaagtacttt--taattccataaagatgatgtacattttctttgggttaaacatatattt |
2656100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 12644055 - 12643973
Alignment:
| Q |
10 |
aagaaaataccgtcagatttaatcaagggtacaaagttcctaaaaataaaattgaaaatatgtgcatatgtccacacacaatc |
92 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
12644055 |
aagaaaataccgtcagatttaatcaagggtacaaagtttctaaaaataaaattgaaaatatttacatatgtccacacacaatc |
12643973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 545252 - 545328
Alignment:
| Q |
240 |
atttatgcaatcatcaactaaaaagatgaaaattggtcgttgttggcgtgactttcattaaaacatgaattttatttata |
319 |
Q |
| |
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||||||||||| | ||||| || |||| |||||||||||| ||| |||||||| | ||||| ||||||||||||||||| |
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| T |
545252 |
atttatgcaattaacaactgaagagat--aaattggtcgttattgacgtgactt-ctttaaagcatgaattttatttata |
545328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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