View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13339_low_5 (Length: 244)
Name: NF13339_low_5
Description: NF13339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13339_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 42661903 - 42662125
Alignment:
| Q |
2 |
gcatgtccaagaaaatgatatctatgatttacttattatttgaaacaattagtgtgcattaattgttttcacaatattcagcttataagcttgtgattca |
101 |
Q |
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| T |
42661903 |
gcatgcccaataaaatgatatctatgatttacttattatttgaaacaatgagtgtgcattaattgttttcacaatattcagcttataagcttgtgattca |
42662002 |
T |
|
| Q |
102 |
gtgattgagtnnnnnnngaaaaccttataagcttgattatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgattcataa |
201 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
42662003 |
gtgattgagtaaaaaaagaaaaccttataagcttgattatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgatt-acaa |
42662101 |
T |
|
| Q |
202 |
gagtatgtaatgaaatgtatggac |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
42662102 |
gagtatgtaatgaaatgtatggac |
42662125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 55641542 - 55641764
Alignment:
| Q |
2 |
gcatgtccaagaaaatgatatctatgatttacttattatttgaaacaattagtgtgcattaattgttttcacaatattcagcttataagcttgtgattca |
101 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55641542 |
gcatgcccaataaaatgatatctatgatttacttattatttgaaacaattagtgtgcatgaattgttttcacaatattcagcttataagcttgtgattca |
55641641 |
T |
|
| Q |
102 |
gtgattgagtnnnnnnngaaaaccttataagcttgattatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgattcataa |
201 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55641642 |
gtgattgagtaaaaaaagaaaaccttgtaagcttgattatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgatt-ataa |
55641740 |
T |
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| Q |
202 |
gagtatgtaatgaaatgtatggac |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
55641741 |
gagtatgtaatgaaatgtatggac |
55641764 |
T |
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Back To:
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