View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13339_low_6 (Length: 236)
Name: NF13339_low_6
Description: NF13339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13339_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 2403316 - 2403095
Alignment:
| Q |
15 |
agtattcatcatcttccaatcacaaaatatgcagaaagttgtttacgaaaatcaaaagctcgtagcaattttctatactccccaatttgtatgtatacac |
114 |
Q |
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| T |
2403316 |
agtattcatcatcttccaatcacaaaatatgcagaaagttgtttacgaaaatcaaaagctcgtggtaattttctacactccccaatttgtatgtatacac |
2403217 |
T |
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| Q |
115 |
gcatacacccacactgatcaaaatagcctccatgttggggaaaacttcttgattagagatcaacaaccacttgtttattttcttttagacccttatttat |
214 |
Q |
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| T |
2403216 |
acatacacccacactgatcaaaatagcctccatgttggggaaaacttcttgattagagatcaacaaccacttgtttattttcttttagaccgttatttat |
2403117 |
T |
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| Q |
215 |
tcaaaaaagaaacaagaaaacc |
236 |
Q |
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|||||||||||||||| ||||| |
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| T |
2403116 |
tcaaaaaagaaacaagcaaacc |
2403095 |
T |
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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 2655902 - 2656050
Alignment:
| Q |
15 |
agtattcatcatcttccaatcacaaaatatgcagaaagttgtttacgaaaatcaaaagctcgtagcaattttctatactccccaatttgtatgtatacac |
114 |
Q |
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| T |
2655902 |
agtattcatcatcttccaatcacaaaatctgcggaaagttgtttccaaaaatcaaaagctcgtggc---------------ccaatttgtatgta--cac |
2655984 |
T |
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| Q |
115 |
gcatacacccacactgatcaaaatagcctccatgttggggaaaacttcttgattagagatcaacaa |
180 |
Q |
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| T |
2655985 |
gcatacacccacaccgatcaaaatagtttacatgttggggaaaacttcttgactagagatcaacaa |
2656050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 39682937 - 39682875
Alignment:
| Q |
15 |
agtattcatcatcttccaatcacaaaatatgcagaaagttgtttacgaaaatcaaaagctcgt |
77 |
Q |
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| T |
39682937 |
agtattcatcatcttccaatcacaaaatctgcggaaagttgtttccaaaaatcaaaagctcgt |
39682875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 39682870 - 39682781
Alignment:
| Q |
97 |
caatttgtatgtatacacgcatacacccacactgatcaaaatagcctccatgttggggaaaacttcttgattagagatcaacaaccacttgtttatt |
193 |
Q |
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| T |
39682870 |
caatttgtatgta--cacgcatacatccacaccgatcaaaatagtttccatgttg-----aacttcttgactagagatcaacaacctcttgtctatt |
39682781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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