View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_high_1 (Length: 817)
Name: NF1333_high_1
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 11 - 718
Target Start/End: Complemental strand, 3567127 - 3566418
Alignment:
| Q |
11 |
catagggcaaccaatcacattaaaactccagctatctctaacaattgtggaacaatcaggatgagaaacccacattctcatgaatttgaactgagaagca |
110 |
Q |
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| T |
3567127 |
catagggcaaccaatcacattaaaaatccagctatctctaacaattgtggaacaatcaggatgagaaacccacattctcatgaatttgaactgagaagca |
3567028 |
T |
|
| Q |
111 |
aaaagtatgttattaacttgaacatctagcaaaagagattagttgtc-agaatgatgttttgtgagggttgataatgtaagggaatgacaagaatctaac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3567027 |
aaaagtatgttattaacttgaacatctagcaaaagagattagttgtctagaatgatgttttgtgagggttgataatgtaagggaatgacaagaatctaac |
3566928 |
T |
|
| Q |
210 |
catgattgattagtgatgtctctattcaaccttctttatgtgcttatattgattcccttaccattggcccaagtgtattcaacaccattggcaggcaaat |
309 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3566927 |
catgactgattagtgatgtctctatccaaccttctttatgtgcttatattgattcccttaccattggctcaagtgtattcaacaccattggcaggcaaat |
3566828 |
T |
|
| Q |
310 |
gaactaaagcatttctgtcgatccaagacttaaactcttccataggtgacctcgtaggagtgattcttcacctatgctcatgagctccaataatagagtt |
409 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566827 |
gaactaaagcatttctgtcgatacaagacttaaactcttccataggtgacctggtaggagtgattcttcacctatgctcatgagctccaataatagagtt |
3566728 |
T |
|
| Q |
410 |
aaaatcacatatgaagcaccatgggaaggcatattgagattgcaaaagagat-nnnnnnnttccataattgtcttctttttctgtaatctgtggaagcat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3566727 |
aaaatcacatatgaagcaccatgggaaggcatattgagattgcaaaagagataaaaaaaattccataattgtcttctttttctgtaatctgtggaagcat |
3566628 |
T |
|
| Q |
509 |
acacaacagatataacaaaagtttggtgtccatcaacaattgagaaggaaacatgttgctcatcaagagtaagaataacaaggttcatggagattttaca |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3566627 |
acacaacagatataacaaaagtttggtgtccatcaacaattgagaaggaaacatgttgctcatcaagaataagaataacaaggttcatggagattttaca |
3566528 |
T |
|
| Q |
609 |
aaaatactagatattagagagcctattaggtctattgttcaaggcaaacattttaagctgtaaactagttatccatctttcagggaattgttcaaaatcc |
708 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566527 |
aaaacactagatattagagagcctatcaggtctattgttcaaggcaaacattttaagctgtaaactagttatccatctttcagggaattgttcaaaatcc |
3566428 |
T |
|
| Q |
709 |
atccaaggtt |
718 |
Q |
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|||||||||| |
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| T |
3566427 |
atccaaggtt |
3566418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 737 - 788
Target Start/End: Complemental strand, 3566424 - 3566373
Alignment:
| Q |
737 |
caaggttatgaagagaaataagtatttgtaaagctaatcttgatgggggatt |
788 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3566424 |
caaggttatgaagagaaataagtatttgtaaagctaatcttgatgagggatt |
3566373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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