View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1333_high_18 (Length: 251)

Name: NF1333_high_18
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1333_high_18
NF1333_high_18
[»] chr2 (4 HSPs)
chr2 (138-207)||(2038211-2038280)
chr2 (138-207)||(29963802-29963872)
chr2 (1-51)||(2038367-2038417)
chr2 (13-51)||(29963671-29963709)
[»] scaffold0004 (1 HSPs)
scaffold0004 (138-204)||(188817-188883)
[»] chr6 (1 HSPs)
chr6 (138-207)||(34518532-34518601)
[»] chr7 (1 HSPs)
chr7 (140-207)||(12539015-12539084)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 2038280 - 2038211
Alignment:
Q  138 aggcagttgaaacaaagcaaaagtacttatgttccctgtatgatatacgataaaatagggaatgattttg 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2038280 aggcagttgaaacaaagcaaaagtacttgtgttccctgtatgatatacgataaaatagggaatgattttg 2038211  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 29963802 - 29963872
Alignment:
Q  138 aggcagttgaaacaaagcaaaagtacttatgtt-ccctgtatgatatacgataaaatagggaatgattttg 207  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29963802 aggcagttgaaacaaagcaaaagtacttgtgtttccctgtatgatatacgataaaatagggaatgattttg 29963872  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2038417 - 2038367
Alignment:
Q  1 agtggaatatctcttacttggtgacgatgaatttcttatagtggactctaa 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2038417 agtggaatatctcttacttggtgacgatgaatttcttatagtggactctaa 2038367  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 29963671 - 29963709
Alignment:
Q  13 cttacttggtgacgatgaatttcttatagtggactctaa 51  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  29963671 cttacttggtgatgatgaatttcttaaagtggactctaa 29963709  T

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Target: scaffold0004 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 188817 - 188883
Alignment:
Q  138 aggcagttgaaacaaagcaaaagtacttatgttccctgtatgatatacgataaaatagggaatgatt 204  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  188817 aggcagttgaaacaaagcaaaagtacttgtgttccctctatgatatacgataaaatagggaatgatt 188883  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 34518532 - 34518601
Alignment:
Q  138 aggcagttgaaacaaagcaaaagtacttatgttccctgtatgatatacgataaaatagggaatgattttg 207  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  34518532 aggcagttgaaacaaagcaaaggtacttgtgttccctgtatgataaacgataaaatagggaatgattttg 34518601  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 12539015 - 12539084
Alignment:
Q  140 gcagttgaaacaaagcaaaagt-acttatgttccctgtatgatatacgat-aaaatagggaatgattttg 207  Q
    |||||||||||||||||||| | |||| ||| |||| |||||||  |||| |||||||||||||||||||    
T  12539015 gcagttgaaacaaagcaaaaataacttgtgtgccctatatgatactcgataaaaatagggaatgattttg 12539084  T

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