View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_high_21 (Length: 246)
Name: NF1333_high_21
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 44926329 - 44926113
Alignment:
| Q |
23 |
cacaacgagctattttttagtagcaagtttcactctacacaatgctgactgtcatcgctgcagtctactgttcttggtctaagtgcttcccattttttaa |
122 |
Q |
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| T |
44926329 |
cacaacgagctatttt--agtagcaagtttcactctacataatgctgactgtcatcgctgcagtctcctgttcttggtctaagtgcttcccattttttaa |
44926232 |
T |
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| Q |
123 |
ttaaattaaaaaatctgaagctattcactataaattcattgttcaatcaaaacgagtaaggattctttccatttatttaatttttaaattaaatggagca |
222 |
Q |
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| T |
44926231 |
ttaaa-----aaatctgaagctattcactataaattcattgttcaatcaaaacgagtaaggattctctccatttatttaaattttaaattaaatggagca |
44926137 |
T |
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| Q |
223 |
cgcaatttctaaaatatataattt |
246 |
Q |
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|||||||||||||||||||||||| |
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| T |
44926136 |
cgcaatttctaaaatatataattt |
44926113 |
T |
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