View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_high_4 (Length: 395)
Name: NF1333_high_4
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 1338734 - 1338354
Alignment:
| Q |
1 |
cacgtggttagaaaatttattctgcttccttaatctttaacctgaactggtgttgaatcttatgttttctactccagagatggtaaactattctgctgac |
100 |
Q |
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|||||||||||||||||| | ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||| |
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| T |
1338734 |
cacgtggttagaaaatttgtcttgcttccttcatcattaacctgaactggttttgaatcttatgttttctactccagagatggtgaattatttggctgac |
1338635 |
T |
|
| Q |
101 |
tctcaaagtgcaccaagtggtatgctttatgatcatatgcctttgaacttaaatatcaatgactatgagagagtttgcctcattccaaagaagaaggttc |
200 |
Q |
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| T |
1338634 |
tctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaaggagaaggttc |
1338535 |
T |
|
| Q |
201 |
catatctttaattgatattatgctctgttattttatctttgttgctctatgtgaattttaattgggcttgctttcctttttagggggcaaacttcaggga |
300 |
Q |
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| T |
1338534 |
cctatctttaattgatattatgtactgttattttatctttgttgctccatgtaaattctaattgtgcttgcttgcctttttagggggcaaacttcaggga |
1338435 |
T |
|
| Q |
301 |
cctcaagggagtccttgtgaaagaaaataaagtggaatgggacccctctgtagaaagagtgtatctaaaatctgggaagcc |
381 |
Q |
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| T |
1338434 |
cctcaagggtgttcttgttaaagaaaataaggtggaatgggacccgtcttttaaaagagtgtatctaaaatctgggaagcc |
1338354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 391
Target Start/End: Complemental strand, 31940546 - 31940157
Alignment:
| Q |
5 |
tggttagaaaatttattctgcttccttaatctttaacctgaactggtgttgaatcttatgttttctactccagagatggtaaactattctgctgactctc |
104 |
Q |
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|||||||||||| | | ||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| || |
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| T |
31940546 |
tggttagaaaatctgtcttgcttccttcatcagtaaactgaactggtgttgaatcttgtgttttctactccagagatggcgaattattctgctgactatc |
31940447 |
T |
|
| Q |
105 |
aaagtgcaccaagtggtatgctttatgatcatatgcctttgaacttaaatatcaatgactatgagagagtttgcctcattccaaagaagaaggttccata |
204 |
Q |
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| |||||||||||||||||||| |||||||| | ||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| || || |
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| T |
31940446 |
atagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgta |
31940347 |
T |
|
| Q |
205 |
tctttaattgatattat---gctctgttattttatctttgttgctctatgtgaattttaattgggcttgctttcctttttagggggcaaacttcagggac |
301 |
Q |
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|||| |||||||||||| | |||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
31940346 |
tcttgaattgatattatgtagtactgtcattttatctttgttgctctatgtaaattttaattgtgcttgcttgcctttttagggggcaaacttcagggac |
31940247 |
T |
|
| Q |
302 |
ctcaagggagtccttgtgaaagaaaataaagtggaatgggacccctctgtagaaagagtgtatctaaaatctgggaagcctatgatacta |
391 |
Q |
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||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| || ||||| |
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| T |
31940246 |
ctcaagggagtgcttgttaaagaaaaaaaggtggaatgggacccctctgttgaaagagtgtatctaaaatctggaaagcctttggtacta |
31940157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 13536459 - 13536427
Alignment:
| Q |
326 |
aataaagtggaatgggacccctctgtagaaaga |
358 |
Q |
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| T |
13536459 |
aataaagtggaatgggacccctctgttgaaaga |
13536427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 391
Target Start/End: Complemental strand, 9390879 - 9390509
Alignment:
| Q |
5 |
tggttagaaaatttattctgcttccttaatctttaacctgaactggtgttgaatcttatgttttctactccagagatggtaaactattctgctgactctc |
104 |
Q |
| |
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|||||||||||| | | ||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |
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| T |
9390879 |
tggttagaaaatctgtcttgcttccttcatcattaagctgaactggtgttgaatcttgtgttttctactccagagatggtgaattattctgctgactctc |
9390780 |
T |
|
| Q |
105 |
aaagtgcaccaagtggtatgctttatgatcatatgcctttgaacttaaatatcaatgactatgagagagtttgcctcattccaaagaagaaggttccata |
204 |
Q |
| |
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|||||||||||||||||||||| |||||||| | |||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
9390779 |
aaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtatcata |
9390680 |
T |
|
| Q |
205 |
tctttaattgatattatgctctgttattttatctttgttgctctatgtgaattttaattgggcttgctttcctttttagggggcaaacttcagggacctc |
304 |
Q |
| |
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|||| ||||||||||||| ||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
9390679 |
tcttgaattgatattatgtactgttat----------------tatgtaaattttaattgtgcttgcttgcctttttagggggcaaacttcagggacctc |
9390596 |
T |
|
| Q |
305 |
aagggagtccttgtgaaagaaaataaagtggaatgggacccctctgtagaaagagtgtatctaaaatctgggaagcctatgatacta |
391 |
Q |
| |
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|||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||||||||||| |||||| || ||||| |
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| T |
9390595 |
aagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagtgtatctaaaatctggaaagcctttggtacta |
9390509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 95 - 391
Target Start/End: Complemental strand, 5640527 - 5640230
Alignment:
| Q |
95 |
gctgactctcaaagtgcaccaagtggtatgctttatgatcatatgcctttgaacttaaatatcaatgactatgagagagtttgcctcattccaaagaaga |
194 |
Q |
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||||||||| ||||||||||||||||| |||| |||||||| | ||| | ||||||| | |||||||||||||||||||||||||||| ||||||| |
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| T |
5640527 |
gctgactctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccgaagaaga |
5640428 |
T |
|
| Q |
195 |
aggttccatatctttaattgatattatgctctgttattttatctttgttgctctatgtgaattttaattgggcttgctttccttttt-agggggcaaact |
293 |
Q |
| |
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||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| || | ||| ||||||| |||||||||||| |
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| T |
5640427 |
aggttcctgatcttgaattgatattatgttctgttattttatctttgttgctccctgtaaattttaattgtgcattcttgccttttttagggggcaaact |
5640328 |
T |
|
| Q |
294 |
tcagggacctcaagggagtccttgtgaaagaaaataaagtggaatgggacccctctgtagaaagagtgtatctaaaatctgggaagcctatgatacta |
391 |
Q |
| |
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|||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| || ||||| |
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| T |
5640327 |
tcagggacctaaagggtgtgcttgtgaaagaaaaaaaagtggagtgggacccctctgttgaaagagtgtatctgaaatctgggaagcctttggtacta |
5640230 |
T |
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