View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1333_low_11 (Length: 369)

Name: NF1333_low_11
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1333_low_11
NF1333_low_11
[»] chr3 (14 HSPs)
chr3 (13-341)||(5502627-5502954)
chr3 (19-201)||(5446031-5446213)
chr3 (26-201)||(5454620-5454796)
chr3 (18-140)||(5489807-5489929)
chr3 (19-133)||(5828424-5828538)
chr3 (19-150)||(5849200-5849331)
chr3 (269-341)||(5446333-5446405)
chr3 (13-149)||(20343260-20343396)
chr3 (19-131)||(5854414-5854526)
chr3 (269-341)||(5490070-5490141)
chr3 (51-140)||(5525471-5525560)
chr3 (269-341)||(5454892-5454964)
chr3 (48-114)||(5802841-5802907)
chr3 (188-262)||(5446222-5446299)
[»] chr6 (3 HSPs)
chr6 (19-201)||(25809599-25809781)
chr6 (269-341)||(25809407-25809479)
chr6 (188-262)||(25809513-25809590)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 5502627 - 5502954
Alignment:
Q  13 aatatgagaacggttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaa 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5502627 aatacgagaacggttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaa 5502726  T
Q  113 gttaatgtcagtcaacaagaaggtataggagcatactaaagagaagnnnnnnncatctatagagaacaaaacatccatttggaagttgaacacaactttt 212  Q
     |||||||||||||||||||||||||||||| ||||||||||||||       |||| |||||||||||||| |||||||||||||||||||||||||||    
T  5502727 attaatgtcagtcaacaagaaggtataggagtatactaaagagaagaaaaaaacatcgatagagaacaaaacttccatttggaagttgaacacaactttt 5502826  T
Q  213 tctta-aaatagctcaggtatatagttacttgaaagtgaaatgagaatttactggtccttaataatatcaacacaaatggtgaaatatgtaaatttatgc 311  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5502827 tcttagaaatagctctggtaaatagttacttgaaagtgaaatgagaatttactggtccataataatatcaacacaaatggtgaaatatgtaaatttatgc 5502926  T
Q  312 tatatatctaactgaaaggactaaatatgt 341  Q
      ||||||||||||||||||| ||||||||    
T  5502927 --tatatctaactgaaaggacaaaatatgt 5502954  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 5446031 - 5446213
Alignment:
Q  19 agaacggttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagttaat 118  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5446031 agaacgtttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaatttctgcttattctttttatgatctgagggttgaagttaat 5446130  T
Q  119 gtcagtcaacaagaaggtataggagcatactaaagagaagnnnnnnncatctatagagaacaaaacatccatttggaagttga 201  Q
    |||||||||||||  ||||||| ||| |||||||||||||       ||||||| ||||||| | | ||||||||| ||||||    
T  5446131 gtcagtcaacaagctggtatagaagcttactaaagagaagaaaaaaacatctatggagaacacagcttccatttgggagttga 5446213  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 5454620 - 5454796
Alignment:
Q  26 ttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagttaatgtcagtc 125  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  5454620 ttagtcctatagtgaatgcaataactcctgcaagagtcccagcaagcttcaacttctgcttattctttttatgatctgagggttgaagttaatgtcagtc 5454719  T
Q  126 -aacaagaaggtataggagcatactaaagagaagnnnnnnncatctatagagaacaaaacatccatttggaagttga 201  Q
     ||||||||||||||| ||| ||||||| |||||       ||||||||||||||| ||| ||||| ||||||||||    
T  5454720 aaacaagaaggtatagaagcttactaaaaagaagagaaatgcatctatagagaacacaacttccatctggaagttga 5454796  T

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Target: chr3; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 5489807 - 5489929
Alignment:
Q  18 gagaacggttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagttaa 117  Q
    ||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5489807 gagaacgcttagtactataatgaatgcaataactcctgcaagagtcccagcaagcttcaatttccgcttattctctttatgatctgagggttgaagttaa 5489906  T
Q  118 tgtcagtcaacaagaaggtatag 140  Q
    |||||||||||||||||||||||    
T  5489907 tgtcagtcaacaagaaggtatag 5489929  T

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Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 5828538 - 5828424
Alignment:
Q  19 agaacggttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagttaat 118  Q
    |||||| ||||||| ||||||||||||| ||||||||| ||||||||| |||||||||| |||   |||||||||||||||||||||||||||||| |||    
T  5828538 agaacgattagtccaataatgaatgcaataactcctgcaagagtcccaacaagcttcaacttctcgttattctttttatgatctgagggttgaagtaaat 5828439  T
Q  119 gtcagtcaacaagaa 133  Q
    |||||||||||||||    
T  5828438 gtcagtcaacaagaa 5828424  T

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Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 5849331 - 5849200
Alignment:
Q  19 agaacggttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagttaat 118  Q
    ||||||||||||||||| ||||| ||||  |||||||| | ||||| |||| ||||||| || ||||||||||||||||||||||||||||||| | |||    
T  5849331 agaacggttagtcctattatgaacgcaatgactcctgcaacagtccaagcacgcttcaagtttcgcttattctttttatgatctgagggttgaaataaat 5849232  T
Q  119 gtcagtcaacaagaaggtataggagcatacta 150  Q
    ||||| |||||||||||||||| ||| |||||    
T  5849231 gtcagccaacaagaaggtatagaagcttacta 5849200  T

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Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 5446333 - 5446405
Alignment:
Q  269 cttaataatatcaacacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggactaaatatgt 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5446333 cttaataatatcaacacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgt 5446405  T

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Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 20343260 - 20343396
Alignment:
Q  13 aatatgagaacggttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaa 112  Q
    |||| |||||||| |||||||||||| ||||||| ||| || || | | |||||| ||||||||| |||| |||||||||||||||||||||||||||||    
T  20343260 aatacgagaacggctagtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaa 20343359  T
Q  113 gttaatgtcagtcaacaagaaggtataggagcatact 149  Q
     | |||||||||||||||| |||||||| ||| ||||    
T  20343360 ataaatgtcagtcaacaagcaggtatagaagcttact 20343396  T

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Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 5854526 - 5854414
Alignment:
Q  19 agaacggttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagttaat 118  Q
    |||||| ||||||||||||| |||| || ||||||||| | |||||||||| ||||||| |||| ||||||||||||||||||||||| ||||| | |||    
T  5854526 agaacgattagtcctataataaatgtaataactcctgcaacagtcccagcatgcttcaagttcctcttattctttttatgatctgaggattgaaataaat 5854427  T
Q  119 gtcagtcaacaag 131  Q
    || ||||||||||    
T  5854426 gttagtcaacaag 5854414  T

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Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 5490070 - 5490141
Alignment:
Q  269 cttaataatatcaacacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggactaaatatgt 341  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  5490070 cttaataatatcaacacaaatggtgaaatat-taaatttatgctatatatctaactgaaaagacaaaatatgt 5490141  T

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Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 5525471 - 5525560
Alignment:
Q  51 tcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagttaatgtcagtcaacaagaaggtatag 140  Q
    |||||| | |||||||||||||||| | |||| ||||||||||||||||||||| ||||||||| |||||||||||||||| || |||||    
T  5525471 tcctgcgacagtcccagcaagcttcgagttcctcttattctttttatgatctgatggttgaagtaaatgtcagtcaacaagcagatatag 5525560  T

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Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 5454892 - 5454964
Alignment:
Q  269 cttaataatatcaacacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggactaaatatgt 341  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||    
T  5454892 cttaataatatcaagacaaatggtgaaatatataagtttatgctatatatctaactgaaaagacaaaatatgt 5454964  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 5802907 - 5802841
Alignment:
Q  48 aactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagt 114  Q
    ||||||||| ||||||||  || ||||||| |||| ||||||||||||||||||||| |||||||||    
T  5802907 aactcctgcaagagtcccgacacgcttcaaattcctcttattctttttatgatctgaaggttgaagt 5802841  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 5446222 - 5446299
Alignment:
Q  188 catttggaagttgaacacaactttttctt---aaaatagctcaggtatatagttacttgaaagtgaaatgagaattta 262  Q
    ||||||||||||||||||||||| |||||   | || |||||||||||||| |||| | ||||||||| |||||||||    
T  5446222 catttggaagttgaacacaacttcttcttcttagaaaagctcaggtatatacttacataaaagtgaaaagagaattta 5446299  T

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Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 25809781 - 25809599
Alignment:
Q  19 agaacggttagtcctataatgaatgcaacaactcctgctagagtcccagcaagcttcaatttccgcttattctttttatgatctgagggttgaagttaat 118  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25809781 agaacgtttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaatttctgcttattctttttatgatctgagggttgaagttaat 25809682  T
Q  119 gtcagtcaacaagaaggtataggagcatactaaagagaagnnnnnnncatctatagagaacaaaacatccatttggaagttga 201  Q
    |||||||||||||  ||||||| ||| |||||||||||||       ||||||| ||||||| | | ||||||||| ||||||    
T  25809681 gtcagtcaacaagctggtatagaagcttactaaagagaagaaaaaaacatctatggagaacacagcttccatttgggagttga 25809599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 25809479 - 25809407
Alignment:
Q  269 cttaataatatcaacacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggactaaatatgt 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25809479 cttaataatatcaacacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgt 25809407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 25809590 - 25809513
Alignment:
Q  188 catttggaagttgaacacaactttttctt---aaaatagctcaggtatatagttacttgaaagtgaaatgagaattta 262  Q
    ||||||||||||||||||||||| |||||   | || |||||||||||||| |||| | ||||||||| |||||||||    
T  25809590 catttggaagttgaacacaacttcttcttcttagaaaagctcaggtatatacttacataaaagtgaaaagagaattta 25809513  T

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