View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_13 (Length: 333)
Name: NF1333_low_13
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 119 - 319
Target Start/End: Original strand, 7009744 - 7009943
Alignment:
| Q |
119 |
gttataacagtcaacgagtcacttgtgaaatttattattgggtgaagaagcaaattaattattggaacagtagatgatgcctttaaatgttttcaattgt |
218 |
Q |
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| T |
7009744 |
gttacaacagtcaacgagtcccttgtgaaatttattattgggtgaagaagcaaattaattattggaacagtagatgatgcctttaaatgttttcaattgt |
7009843 |
T |
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| Q |
219 |
aacaatgtaacnnnnnnnnnntgttttcaattgtagatgagtttgatatattcttccttaactctgattttgagatacaaataatctttgacattcacat |
318 |
Q |
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| T |
7009844 |
aacaatgtaac-aaaaaaatatgttttcaattgtagatgagtttgatatattcttccttaactctgattttgagatacaaataatctttgccattcacat |
7009942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 7009666 - 7009731
Alignment:
| Q |
46 |
attatcggtcatgtaatcagtcaaaacaat--------gagttagaagttacaacaattagctgtt |
103 |
Q |
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| T |
7009666 |
attatcggtcatgtaatcaatcaaaacaatgagtcaatgagttagaagttacaacaattagctgtt |
7009731 |
T |
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