View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_17 (Length: 320)
Name: NF1333_low_17
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1529844 - 1529942
Alignment:
| Q |
1 |
ttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgcattgtatctcttcttc |
99 |
Q |
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| T |
1529844 |
ttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgcattgtatctcttcttc |
1529942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 255
Target Start/End: Original strand, 1529966 - 1530091
Alignment:
| Q |
127 |
aatgattatttgaaaaccccttttgatctatgtgctaaaaattgagnnnnnnnnnnngttgggtttgttgaaatctggatagtagtttgaatttgataaa |
226 |
Q |
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| T |
1529966 |
aatgattatttgaaaaccccttttgatctatgtgctaaaaattgagtttttttt---gttgggtttgttgaaatctgaatagtagtttgaatttgataaa |
1530062 |
T |
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| Q |
227 |
tattgctatttaaacatgtttaatgattg |
255 |
Q |
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| T |
1530063 |
tattgctatttaaacatgtttaatgattg |
1530091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 22476874 - 22476778
Alignment:
| Q |
1 |
ttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgcattgtatctcttct |
97 |
Q |
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| T |
22476874 |
ttaaaattgcagccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgcattgtatctcttct |
22476778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 26841619 - 26841713
Alignment:
| Q |
1 |
ttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgcattgtatctctt |
95 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26841619 |
ttaaaattgcaaccttctaattattgggttatatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgaattgtatctctt |
26841713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 22476749 - 22476625
Alignment:
| Q |
128 |
atgattatttgaaaaccccttttgatctatgtgctaaaaattgagnnnnnnnnnnngttgggtttgttgaaatctggatagtagtttgaatttgataaat |
227 |
Q |
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| T |
22476749 |
atgattatttgaaaaccccttttgatctatgtgctaaaaattaagtttttttt---gtttggtttgttgaaatctggattgtagtttgaatttgataaat |
22476653 |
T |
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| Q |
228 |
attgctatttaaacatgtttaatgattg |
255 |
Q |
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| T |
22476652 |
attgctatttaaacatgtttaatgattg |
22476625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 26841739 - 26841865
Alignment:
| Q |
128 |
atgattatttgaaaaccccttttgatctatgtgctaaaaattgagnnnnnnnnnnngttgggtttgttgaaatctggatagtagtttgaatttgataaat |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |
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| T |
26841739 |
atgattatttgaaaaccccttttgatctatgtgctaaaaattgagtatttctttt-gttcgttttgttgaaatctggattgtagtttgaatttgataaat |
26841837 |
T |
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| Q |
228 |
attgctatttaaacatgtttaatgattg |
255 |
Q |
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|||||||||||||||||||| ||||||| |
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| T |
26841838 |
attgctatttaaacatgtttgatgattg |
26841865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 255
Target Start/End: Original strand, 29099045 - 29099165
Alignment:
| Q |
131 |
attatttgaaaaccccttttgatctatgtgctaaaaattgagnnnnnnnnnnngttgggtttgttgaaatctggatagtagtttgaatttgataaatatt |
230 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||||||| ||| |
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| T |
29099045 |
attatttggaaaccccttttgatctatgtgctaaaaattgaatttttttaa----tgggtttgtttaaatctgcattgtagtttgaatttgataaagatt |
29099140 |
T |
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| Q |
231 |
gctatttaaacatgtttaatgattg |
255 |
Q |
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|||||||||| |||||||||||||| |
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| T |
29099141 |
gctatttaaatatgtttaatgattg |
29099165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 21923016 - 21923054
Alignment:
| Q |
217 |
atttgataaatattgctatttaaacatgtttaatgattg |
255 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
21923016 |
atttgataaatactgctatttaaacatgtttaatgattg |
21923054 |
T |
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