View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_2 (Length: 561)
Name: NF1333_low_2
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 168 - 535
Target Start/End: Complemental strand, 48645876 - 48645509
Alignment:
| Q |
168 |
ttctacttcaagtggaaataatgataataagaacaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaat |
267 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645876 |
ttctacctcaagtggaaataatgataataagaacaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaat |
48645777 |
T |
|
| Q |
268 |
agtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcgatcgtcatgcaaatt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
48645776 |
agtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgtggtcgtcatgcaaatt |
48645677 |
T |
|
| Q |
368 |
tcaatttccttgatacacctctcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgaaaggttgctgcaaattttgctaa |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48645676 |
tcaatttccttgatacacctctcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgagaggttgctgcaaattttgctaa |
48645577 |
T |
|
| Q |
468 |
caaaaatccaccaattattgataataataataatggaaataatagtaatgttcaatccaatatggtga |
535 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645576 |
caaaaatccaccaattattgataataataataatggaaataatagtaatgttcaatccaatatggtga |
48645509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 81 - 535
Target Start/End: Complemental strand, 48654379 - 48653922
Alignment:
| Q |
81 |
gaatgtaactcatatactacacatggatcatcatcgtcat---gtcactactggtcaggttaaaactcnnnnnnnnnnnnnnnnnnnnnnttctacttca |
177 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| |
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| T |
48654379 |
gaatgtaactcatatactacacatggatcatcatcatcatcatgtcactactggtcaggttaaaactccaccatcatcatcatcatc---ttctacttca |
48654283 |
T |
|
| Q |
178 |
agtggaaataatgataataaga---acaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtg |
274 |
Q |
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|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654282 |
agtggaaataatgataataagactgagaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtg |
48654183 |
T |
|
| Q |
275 |
aaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaattt |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
48654182 |
aaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgtggtcgtcatgcaaatttcaattt |
48654083 |
T |
|
| Q |
375 |
ccttgatacacctctcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgaaaggttgctgcaaattttgctaacaaaaat |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48654082 |
ccttgatacacctctcaatttggatatcaatgcagtttctaacaattcgcttacaccacaacaaattcgagaggttgctgcaaattttgctaacaaaaat |
48653983 |
T |
|
| Q |
475 |
ccaccaattattgataataataataatggaaataatagtaatgttcaatccaatatggtga |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48653982 |
ccaccaattattgataataataataatggaaataatagtaatgttcaatccaatatggtga |
48653922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 48654427 - 48654396
Alignment:
| Q |
30 |
attaattcaaattagctatacccacataaaac |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
48654427 |
attaattcaaattagctatacccacataaaac |
48654396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 389 - 531
Target Start/End: Complemental strand, 8146150 - 8145999
Alignment:
| Q |
389 |
tcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgaaaggttgctgcaaattttgctaacaaaaatccaccaattattga |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8146150 |
tcaatttggatatcaatgcagtttctaacaattcacttataccacaacaaattcgagaggttgctgcaaattttgctaacaaaaacccaccaattattga |
8146051 |
T |
|
| Q |
489 |
taata------ataataatggaaataata---gtaatgttcaatccaatatg |
531 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
8146050 |
taataataacaataataatggaaataataatggtaatgttcaatccaatatg |
8145999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 30545273 - 30545201
Alignment:
| Q |
431 |
cacaacaaattcgaaaggttgctgcaaattttgctaacaaaaatccaccaattattgataataataataatgg |
503 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30545273 |
cacaacaaattcaagaggttgctgcaaattttgctaacaaaaacccaccaattattgataataataataatgg |
30545201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 44154487 - 44154554
Alignment:
| Q |
431 |
cacaacaaattcgaaaggttgctgcaaattttgctaacaaaaatccaccaattattgataataataat |
498 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44154487 |
cacaacaaattcaagaggttgctgcaaattttgctaacaaaaacccaccaattattgataataataat |
44154554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 389 - 497
Target Start/End: Complemental strand, 48569990 - 48569882
Alignment:
| Q |
389 |
tcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgaaaggttgctgcaaattttgctaacaaaaatccaccaattattga |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||| |
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|
| T |
48569990 |
tcaatttggatatcaatgcagtttctaacaattcacttataccacaacaaattcgagaggttgctgtaaattttgctaacaaaaacccacaaattattga |
48569891 |
T |
|
| Q |
489 |
taataataa |
497 |
Q |
| |
|
||||||||| |
|
|
| T |
48569890 |
taataataa |
48569882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 225 - 387
Target Start/End: Original strand, 3573750 - 3573912
Alignment:
| Q |
225 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || || |||||||||| ||| |
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| T |
3573750 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3573849 |
T |
|
| Q |
325 |
tttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacct |
387 |
Q |
| |
|
|||||||| || || |||||||| || | || |||||||| ||||||||||| | |||||||| |
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|
| T |
3573850 |
tttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaatacacct |
3573912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 3551332 - 3551496
Alignment:
| Q |
225 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
324 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| ||||||||| | || ||||||||||||||||||||||| || ||||||||||| | |||| |
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| T |
3551332 |
gagaaattggggaaaatgggtatctgagattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagagaaagcagcaagagca |
3551431 |
T |
|
| Q |
325 |
tttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctct |
389 |
Q |
| |
|
|||||||| || ||||||||||| || | || |||||||| ||||||||||| | | |||||||| |
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|
| T |
3551432 |
tttgatgcagccctttattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctct |
3551496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 3589042 - 3589206
Alignment:
| Q |
225 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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|
| T |
3589042 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3589141 |
T |
|
| Q |
325 |
tttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctct |
389 |
Q |
| |
|
|||||||| || || |||||||| || | || |||||||| ||||||||||| | | |||||||| |
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|
| T |
3589142 |
tttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctct |
3589206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 202 - 389
Target Start/End: Original strand, 3562483 - 3562670
Alignment:
| Q |
202 |
aagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgatt |
301 |
Q |
| |
|
|||| ||||||||| ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||| |
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|
| T |
3562483 |
aagatgtacaaaggggtgaggaagagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatgaca |
3562582 |
T |
|
| Q |
302 |
cagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctct |
389 |
Q |
| |
|
|| || |||||||||| ||||||||||| || || |||||||| || | || |||||| | ||||||||||| | | |||||||| |
|
|
| T |
3562583 |
cacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctct |
3562670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 236 - 389
Target Start/End: Original strand, 10025200 - 10025353
Alignment:
| Q |
236 |
gaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgc |
335 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||| || || |||||||||| |||||||||||| || |
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|
| T |
10025200 |
gaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcacatgacacacaagaaaaagcagctagagcatttgatgcagc |
10025299 |
T |
|
| Q |
336 |
actttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctct |
389 |
Q |
| |
|
|| |||||||| || | || |||||| | ||||||||||| | |||||||||| |
|
|
| T |
10025300 |
cctatattgtctacgtggtcctcatgctagtttcaatttccctaatacacctct |
10025353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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