View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_20 (Length: 294)
Name: NF1333_low_20
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 40845921 - 40845761
Alignment:
| Q |
75 |
ataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgttggagaacttg |
174 |
Q |
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| T |
40845921 |
ataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccccggttttgatgactctggttattctgttgaagaacttg |
40845822 |
T |
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| Q |
175 |
gtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaatgttttatgt |
235 |
Q |
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| T |
40845821 |
gtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaatgttttatgt |
40845761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 40841366 - 40841240
Alignment:
| Q |
75 |
ataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgttggagaacttg |
174 |
Q |
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| T |
40841366 |
ataccagagaatgatcctcttgtcctctatcgaaacattgtggagaaaaagttcactttccctggttttgatgaccctggttattctgttgaagaacttg |
40841267 |
T |
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| Q |
175 |
gtcatcatgcagggtattatagtcttc |
201 |
Q |
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| T |
40841266 |
gtcatcatgcagggtattatagtcttc |
40841240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 225
Target Start/End: Complemental strand, 40852690 - 40852542
Alignment:
| Q |
77 |
accagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgttggagaacttggt |
176 |
Q |
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| T |
40852690 |
accagagaatgatcctcattttcttcatggaaatattatggagaagaagttcactttccctggttttgttgactctggtgcttctgttgaagaacttggt |
40852591 |
T |
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| Q |
177 |
catcatgcagggtattatagtcttcctcattccaaagctgctaggtaaa |
225 |
Q |
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||||||||||| |||||| |||||||||||||||||||||| ||||||| |
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| T |
40852590 |
catcatgcaggctattatcgtcttcctcattccaaagctgcaaggtaaa |
40852542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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