View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_22 (Length: 279)
Name: NF1333_low_22
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 48126233 - 48126470
Alignment:
| Q |
9 |
cagagagactctgattaaaaatctgagtggtgaaaattgtataaaggaatgaataataataatagtaactaacctgccttggaggttgatgggttgaata |
108 |
Q |
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| T |
48126233 |
cagagagactctgattaaaaatctgagtggtgaaaattgtataaaggaatgaataataataatagtaactaacctgccttggaggttgatgggttgaata |
48126332 |
T |
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| Q |
109 |
acggagttgtgttatgaaacgtctccaacaagccatgtgacagtgtgttgagtcctctgagtgagtgagtgagtatgaacttcttcttctcttcctaaca |
208 |
Q |
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| T |
48126333 |
acggagttttgttatgaaacgtctccaacaagccatgtgacagtgtgttgagtcctc----tgagtgagtgagtatgaacttcttcttctcttcctaaca |
48126428 |
T |
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| Q |
209 |
tgaatgattctctcactctccacatcgaattctcctataacc |
250 |
Q |
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| T |
48126429 |
tgaatgattttctcactctccacatcgaattctcctataacc |
48126470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 48138639 - 48138534
Alignment:
| Q |
38 |
gtgaaaattgtataaaggaa-tgaataataataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaa |
136 |
Q |
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| T |
48138639 |
gtgaaaattgtataaaggaaatgagtaataataata---actaacctgccatggagattgatgggttgaataacggaggtgcgttatgaatcgcctccaa |
48138543 |
T |
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| Q |
137 |
caagccatg |
145 |
Q |
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| T |
48138542 |
caagccatg |
48138534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 25251314 - 25251209
Alignment:
| Q |
38 |
gtgaaaattgtataaaggaa-tgaataataataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaa |
136 |
Q |
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|||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| || ||||||| || |||||| |
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| T |
25251314 |
gtgaaaattgtataaaggaaatgagtaataataata---actaacctgccatggagattgatgggttgaataacggaggtgcattatgaatcgcctccaa |
25251218 |
T |
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| Q |
137 |
caagccatg |
145 |
Q |
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| T |
25251217 |
caagccatg |
25251209 |
T |
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