View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_25 (Length: 261)
Name: NF1333_low_25
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 42849144 - 42848961
Alignment:
| Q |
40 |
gacaaaagcatgatttctaatggcagaacaagcatgttgaaatccatgaagggaatagtacttcacatcatcggtcaacaaccttgattttaaacttcgt |
139 |
Q |
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| T |
42849144 |
gacaaaagcatgatttctaatggaagaacaagcatgttgaaatccatgaagggaatagtacttcacatca----tcaacaaccttgattttaaacttcgt |
42849049 |
T |
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| Q |
140 |
ttccaatttaaatttctagtaaagagataattgtaacaccttctgcagaaaaagagacacgcaatgaattgacaattcctagtaaagaagggaaagaat |
238 |
Q |
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| T |
42849048 |
ttccaatttaaatttctagtaaagagataattgtaacacc-----------aagagacacgcaatgaattgacaattcctagtaaagaagggaaagaat |
42848961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 42855673 - 42855606
Alignment:
| Q |
170 |
ttgtaacaccttctgcagaaaa-agagacacgcaatgaattgacaattcctagtaaagaagggaaaga |
236 |
Q |
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| T |
42855673 |
ttgtaacaccttctgcaaaaaagaaagacacgcaatgaattgacaattcctagtaaagaagggaaaga |
42855606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 42857226 - 42857184
Alignment:
| Q |
192 |
agagacacgcaatgaattgacaattcctagtaaagaagggaaa |
234 |
Q |
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| T |
42857226 |
agagactcgcaatgaattgacaattcctagtaaagaagggaaa |
42857184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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