View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_28 (Length: 251)
Name: NF1333_low_28
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23930649 - 23930428
Alignment:
| Q |
1 |
tttttggaactttcctaaggtttgtggtaatggtggtggttgttctcttgggataaggttgtatggtacttcccatctttgcttgtttgcatctgttatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930649 |
tttttggaactttcctaaggtttgtggtaatggtggtggttgttctcttgggataaggttgtatggtacttcccatctttgcttgtttgcatctgttatg |
23930550 |
T |
|
| Q |
101 |
tgtactcttaaacggttctctgtttcatgcctgcaaaaaacaaacaggtacaattaacaacattagagaaacaaaatccattagaaccaacacttctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930549 |
tgtactcttaaacggttctctgtttcatgcctgcaaaaaacaaacaggtacaattaacaacattagagaaacaaaatccattagaaccaacacttctgat |
23930450 |
T |
|
| Q |
201 |
cgaaagtttgtccagtgtccaa |
222 |
Q |
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||||||| |||||||||||||| |
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| T |
23930449 |
cgaaagtctgtccagtgtccaa |
23930428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 50122169 - 50122273
Alignment:
| Q |
32 |
ggtggtggttgttctcttgggataaggttgtatggtacttcccatctttgcttgtttgcatctgttatgtgtactcttaaacggttctctgtttcatgcc |
131 |
Q |
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||||||||||| || ||||| | ||| ||||| || || ||||| |||||||| |||||||| ||||||||||| || ||||| |||| || || |||| |
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| T |
50122169 |
ggtggtggttgctcccttggcaaaagattgtagggaacctcccacctttgcttctttgcatcagttatgtgtaccctcaaacgactctcagtctcgtgcc |
50122268 |
T |
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| Q |
132 |
tgcaa |
136 |
Q |
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||||| |
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| T |
50122269 |
tgcaa |
50122273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 28486761 - 28486797
Alignment:
| Q |
186 |
accaacacttctgatcgaaagtttgtccagtgtccaa |
222 |
Q |
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||||||||||||||||||| || |||||||||||||| |
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| T |
28486761 |
accaacacttctgatcgaaggtgtgtccagtgtccaa |
28486797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 29799174 - 29799210
Alignment:
| Q |
186 |
accaacacttctgatcgaaagtttgtccagtgtccaa |
222 |
Q |
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||||||||||||||||||| || |||||||||||||| |
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| T |
29799174 |
accaacacttctgatcgaaggtgtgtccagtgtccaa |
29799210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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