View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_29 (Length: 251)
Name: NF1333_low_29
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23930880 - 23931122
Alignment:
| Q |
1 |
acatggtattaagttatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcctatg |
100 |
Q |
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| T |
23930880 |
acatgggattaaattatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcctatg |
23930979 |
T |
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| Q |
101 |
tatatggatctgagaaataatggtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctttga |
200 |
Q |
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| T |
23930980 |
tatatggatctgagaaataatggtggaaaagcttctgcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctttga |
23931079 |
T |
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| Q |
201 |
cttataaggttattggtggtgtttttgatttttacttcatctc |
243 |
Q |
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| T |
23931080 |
cttataaggttattggtggtgtttttgatttttacttcttctc |
23931122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 50121894 - 50121667
Alignment:
| Q |
11 |
aagttatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcctatgtatatggatc |
110 |
Q |
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| T |
50121894 |
aagttacatccaaatgatccttacactttgtatacaactgatatatcagctattaacctcaattctgatttatatggatcacatcctgtatacatggatc |
50121795 |
T |
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| Q |
111 |
tgagaaataatggtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctttgacttataaggt |
210 |
Q |
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| T |
50121794 |
tcagaaattatggtggaaaaccttatgcacatggtgttcttttgttgaatagcaatggaatggatgtgttttacaaagggaactctttgacatacaagat |
50121695 |
T |
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| Q |
211 |
tattggtggtgtttttgatttttacttc |
238 |
Q |
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| T |
50121694 |
tattggaggaatacttgatttttacttc |
50121667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 50112326 - 50112086
Alignment:
| Q |
1 |
acatggtattaagttatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcctatg |
100 |
Q |
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|||||| || ||||| ||||| | ||| ||||||||||| ||||| || ||| | |||| |||||||| || ||||| ||||||| ||||||||| | |
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| T |
50112326 |
acatgggataaagttgtatcctaatgatccttatactttgtataccactgatgtagcagccattaatctcaacactgatctatatgggtctcatcctgta |
50112227 |
T |
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| Q |
101 |
tatatggatctgagaaataatg---gtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctt |
197 |
Q |
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|| |||||||| |||||| ||| |||| || || ||||||| |||||||||||||||||| |||||||||||||||||||| ||||| || |||| |
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| T |
50112226 |
tacatggatcttagaaatcatgaaggtggcaagcctaatgcacatggtgttttgttgttgaatagcaatggaatggatgtgttttacaaagggacctctt |
50112127 |
T |
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| Q |
198 |
tgacttataaggttattggtggtgtttttgatttttacttc |
238 |
Q |
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|||| || ||| ||||||| || || |||||||||||||| |
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| T |
50112126 |
tgacgtacaagattattggaggggtacttgatttttacttc |
50112086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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