View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_3 (Length: 518)
Name: NF1333_low_3
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Original strand, 48125580 - 48126085
Alignment:
| Q |
13 |
aatatctaaagccaataatagtttcctaggcacttcaaacacggatgaagtctatagaattccaccgcgaaatgtaatttgaagttaaacaaagagaaac |
112 |
Q |
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| T |
48125580 |
aatatctaaagccaataatagtttcctaggcacttcaaacacggatgtagtctatagaattccaccgcgaaatgtaatttgaagttaaacaaagagaaac |
48125679 |
T |
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| Q |
113 |
aaaaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactca--gaaccttgaaacttgttacaaaatacatagtttctagccaataaatt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48125680 |
aaaaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactcatagaaccttgaaacttgttacaaaatacatagtttctagccaaagaatt |
48125779 |
T |
|
| Q |
211 |
tttgacctttctaaattcagattgacgcctttcaacctgcaaaaataacttgcagagttatatatgacaaagaaaagtaatacaaaatacaaagctgaga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48125780 |
tttgacctttctaaattcagattgacgcctttcaacctgcaaaaataacttacagagttatatatgacaaa--aaagtaatacaaaatacaaagctgaga |
48125877 |
T |
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| Q |
311 |
tggaaattgtgtacatatagaaaaataaatttgcagtccaattatgatatcagtggcagtacctaattgtcaagataccaagaaccttgcaagagattaa |
410 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48125878 |
tggaaattgtgtacatataaaaaaataaatttgcagtccaattatgatatcagtggcagtacctaattgtcaagataccaagaaccttgcaagagattaa |
48125977 |
T |
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| Q |
411 |
actatagaaaagtaatatgatacattgatacccaacgagttgatattattttgatgccagttccactatagtttggtgaacctgcattctctatattttt |
510 |
Q |
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| T |
48125978 |
acgatagaaaagtaatatgatacattgatacccaacgagttgatattattttgatgccagttccactatagtttggtgaacctgcattctctatattttt |
48126077 |
T |
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| Q |
511 |
atttaatc |
518 |
Q |
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|||||||| |
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| T |
48126078 |
atttaatc |
48126085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 259
Target Start/End: Complemental strand, 48139194 - 48139048
Alignment:
| Q |
115 |
aaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactc--agaaccttgaaacttgttacaaaatacatagtttctagccaataaatttt |
212 |
Q |
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|||||||| ||||||||||||||||||||| | |||| || | |||| | | |||| |||||| || | | || ||||||| ||| |||||||| || |
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| T |
48139194 |
aaacataacatgaactaaatgtggtaaggggataaaatttccatacttgaatagccttcaaacttattccgagatgaatagtttgtagtcaataaatctt |
48139095 |
T |
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| Q |
213 |
tgacctttctaaattcagattgacgcctttcaacctgcaaaaataac |
259 |
Q |
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| T |
48139094 |
tgacctttccaaattccgattgacgcctttcaatctgcaaaaataac |
48139048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 318
Target Start/End: Original strand, 48115614 - 48115818
Alignment:
| Q |
114 |
aaaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactc--agaaccttgaaacttgttacaaaatacatagtttctagccaataaattt |
211 |
Q |
| |
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||||||||| || ||||||||| ||||| ||||||| || | |||||| | | ||||||||||| ||| | ||| |||| |||||| |||||| | |
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| T |
48115614 |
aaaacataacataaactaaatgcggtaaaggaacaacagatccgtacttgtatagccttgaaacttattaggagataaatagcttctagtcaataatcct |
48115713 |
T |
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| Q |
212 |
ttgacctttctaaattcagattgacgcctttcaacctgcaaaaataacttgcagagttatatatgacaaagaaaagtaatacaaaatacaaagctgagat |
311 |
Q |
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||||| |||| |||||| |||||| ||| |||||||||||||||||| | | | | |||||||| || ||||||||||||| ||| | ||| ||||| |
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| T |
48115714 |
ttgacttttccaaattctgattgatgccgttcaacctgcaaaaataagctataaaat--tatatgaccaataaaagtaatacaagatatagagcagagat |
48115811 |
T |
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| Q |
312 |
ggaaatt |
318 |
Q |
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||||||| |
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| T |
48115812 |
ggaaatt |
48115818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 48135885 - 48135938
Alignment:
| Q |
202 |
caataaatttttgacctttctaaattcagattgacgcctttcaacctgcaaaaa |
255 |
Q |
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|||||||| ||||||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
48135885 |
caataaatctttgacctttccgaattctaattgacggctttcaacctgcaaaaa |
48135938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 124 - 319
Target Start/End: Complemental strand, 32022433 - 32022238
Alignment:
| Q |
124 |
atgaactaaatgtggtaagggaacaaaagtttcgtactcagaa--ccttgaaacttgttacaaaatacatagtttctagccaataaatttttgacctttc |
221 |
Q |
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||||||||||| || ||||||||||||||||| |||| || || | ||||||||| | |||||||||||||| |||||| | ||||||||||| |
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| T |
32022433 |
atgaactaaatatgaaaagggaacaaaagtttcatacttggacagccctcaaacttgttgtgagatacatagtttctactcaataattctttgacctttc |
32022334 |
T |
|
| Q |
222 |
taaattcagattgacgcctttcaacctgcaaaaataacttgcagagttatatatgacaaagaaaagtaatacaaaatacaaagctgagatggaaattg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| | || | |||||||||| ||||||||||||| ||| | ||| ||||||||||||| |
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| T |
32022333 |
cgaattcagattgacgcctttcaacctgcaaaaataacttata-agat-catatgacaaataaaagtaatacaagatatagagcagagatggaaattg |
32022238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 364
Target Start/End: Complemental strand, 32010375 - 32010237
Alignment:
| Q |
223 |
aaattcagattgacgcctttcaacctgcaaaaataacttgcagagttatatatgacaaagaaaagtaatacaaaatacaaagctgagatggaaattgtgt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||| | || | |||||||||| ||||| ||||||| ||||| || ||||| |||||| |
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| T |
32010375 |
aaattcagattgacgcctttcaacctgcaaaaataacttata-agat-gatatgacaaataaaaggaatacaatatacagtgcagagatagaaattagaa |
32010278 |
T |
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| Q |
323 |
acatatagaaaaataaatttgcagtccaattatgatatcagt |
364 |
Q |
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| T |
32010277 |
acatata-aaaaataaatttgcagttcaatcatgataccagt |
32010237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 25251791 - 25251722
Alignment:
| Q |
190 |
atagtttctagccaataaatttttgacctttctaaattcagattgacgcctttcaacctgcaaaaataac |
259 |
Q |
| |
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||||||| ||| |||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
25251791 |
atagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataac |
25251722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 25247863 - 25247916
Alignment:
| Q |
202 |
caataaatttttgacctttctaaattcagattgacgcctttcaacctgcaaaaa |
255 |
Q |
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|||||||| ||||||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
25247863 |
caataaatctttgacctttccgaattctaattgacggctttcaacctgcaaaaa |
25247916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 25252048 - 25252007
Alignment:
| Q |
13 |
aatatctaaagccaataatagtttcctaggcacttcaaacac |
54 |
Q |
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|||||||||||||||||||||||||| | | ||||||||||| |
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| T |
25252048 |
aatatctaaagccaataatagtttcccaagtacttcaaacac |
25252007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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