View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1333_low_4 (Length: 488)
Name: NF1333_low_4
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1333_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 17820568 - 17820207
Alignment:
| Q |
18 |
ctgtggtgaggtgaaaaaatgagattggtttcttgagatgagtagaaattagggctgatgagcttatgatagcaactaaagagaggattaaccaaaatgt |
117 |
Q |
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| T |
17820568 |
ctgtggtgaggtgaaaaaatgagattggtttcttgagatgagtagaaattagggctgatgagattatgatagcaactaaagagaggattaaccaaaatgt |
17820469 |
T |
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| Q |
118 |
tttgggaaggaattttctaggcttgtctagcaaagattgttgattagccatagtgataagtagctactagtggttgctcactatgatatttgtttacata |
217 |
Q |
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| T |
17820468 |
ttttggaagggattttctaggcttgtctagcaaagattgttgattagccatagtgataagtagctactagtggttgctcactatgatatttgtttacata |
17820369 |
T |
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| Q |
218 |
atcatccttatatagaccnnnnnnnnnnttatattttgtagaatttaatacaaataagagaaattccatgtggaagacattgattaattgattaatcagc |
317 |
Q |
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| T |
17820368 |
atcatccttatatagacca-------------attttgtagaattttatacaaataagagaaattccaagtggaagacattgattaattgattaatttgc |
17820282 |
T |
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| Q |
318 |
attaaagtcgcagctaggagaggaacatgtgggagactaatagatccatcttctgtttttaataattaaaaagaaaag |
395 |
Q |
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| T |
17820281 |
attaaagtggcagctaggagaggaacaagtgggagactaatagagccatctt---tttttaataattaaaaagaaaag |
17820207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 17776084 - 17775947
Alignment:
| Q |
38 |
gagattggtttcttgagatgagtagaaattagggctgatgagcttatgatagcaactaaagagaggattaaccaaaatgttttgggaaggaattttctag |
137 |
Q |
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| T |
17776084 |
gagataggtttatttagatgagaaataataagggctgatgaacttatgatagcaactaaagagaggactaaccaaaatgtttttggaatggattttcttg |
17775985 |
T |
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| Q |
138 |
gcttgtctagcaaagattgttgattagccatagtgata |
175 |
Q |
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| T |
17775984 |
gcttgtctagcaaagattgttggatagccatactgata |
17775947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 17806776 - 17806662
Alignment:
| Q |
38 |
gagattggtttcttgagatgagtagaaattagggctgatgagcttatgatagcaactaaagagaggattaaccaaaatgttttgggaaggaattttctag |
137 |
Q |
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| T |
17806776 |
gagatgggtttgttcagatgagaaataataagggctgatgagcttatgatagcagctaaagagagaactaaccaaaatgttttgggaatggattttctag |
17806677 |
T |
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| Q |
138 |
gcttgtctagcaaag |
152 |
Q |
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| T |
17806676 |
gcttgtgtagcaaag |
17806662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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