View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1333_low_6 (Length: 448)

Name: NF1333_low_6
Description: NF1333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1333_low_6
NF1333_low_6
[»] chr3 (8 HSPs)
chr3 (9-421)||(11495118-11495530)
chr3 (63-404)||(10079870-10080211)
chr3 (63-404)||(10186840-10187181)
chr3 (9-420)||(2921695-2922109)
chr3 (9-406)||(5968000-5968396)
chr3 (17-406)||(11488884-11489273)
chr3 (9-407)||(3872313-3872702)
chr3 (130-218)||(4132628-4132716)
[»] chr5 (1 HSPs)
chr5 (9-406)||(16448969-16449366)
[»] chr4 (1 HSPs)
chr4 (9-407)||(5990706-5991104)
[»] scaffold0603 (1 HSPs)
scaffold0603 (9-421)||(2361-2773)
[»] chr8 (1 HSPs)
chr8 (113-404)||(18390240-18390528)
[»] chr1 (2 HSPs)
chr1 (16-406)||(17313950-17314331)
chr1 (173-218)||(13936120-13936165)
[»] chr2 (1 HSPs)
chr2 (310-388)||(42506688-42506765)


Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Original strand, 11495118 - 11495530
Alignment:
Q  9 accacagatgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtg 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495118 accacagatgcatagtgtttcaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtg 11495217  T
Q  109 agatgttcccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11495218 agatgttcccaagtttgctcagtattccacataatccctccaacatagccaacagtcaatttctgtaaactgataggaaaatcatctatgacaaaagatt 11495317  T
Q  209 gaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495318 gaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaat 11495417  T
Q  309 ataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactcttttcg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495418 ataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactcttttcg 11495517  T
Q  409 gatgctctttctg 421  Q
    |||||||||||||    
T  11495518 gatgctctttctg 11495530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 63 - 404
Target Start/End: Complemental strand, 10080211 - 10079870
Alignment:
Q  63 gttcaccatatcattgccattaattcgcaacactgaaagacaagtgagatgttcccaagtttgctcagtattccacataatccctccaacagagccaaca 162  Q
    ||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  10080211 gttcaccatatcattaccgcttattcgcaacactgaaagacaagtgagatgttcccaagttggctcagttttccacataatccctccaacagagccaaca 10080112  T
Q  163 ctcaatttctgtaaactgataggaaaatcatctatgacaaaagattgaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttca 262  Q
     ||| || |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||| || |||    
T  10080111 gtcagttcctgtaaactgctaggcaaatcatctatgacaaaagattgaacatttggtagattatcaatttccatttctttaaggccagtaagatcggtca 10080012  T
Q  263 ttctttcaggtagcgaacgaagcttcccacacttccacactgcaatataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcatt 362  Q
    ||  ||| || || ||| |||||||| |||||||||||| |||||||||||||||||||||||    ||||||||||| ||||||||| || |  |||||    
T  10080011 ttgcttctggcagtgaatgaagcttctcacacttccacaatgcaatataaacaaggtttggagtagccaatccacctgagggaaatgattcaagttcatt 10079912  T
Q  363 acaatcccatattttgatgcttctaagaaacgagagactctt 404  Q
    ||| ||||||||||| |||||||||||||| |||||||||||    
T  10079911 acagtcccatattttaatgcttctaagaaatgagagactctt 10079870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 63 - 404
Target Start/End: Complemental strand, 10187181 - 10186840
Alignment:
Q  63 gttcaccatatcattgccattaattcgcaacactgaaagacaagtgagatgttcccaagtttgctcagtattccacataatccctccaacagagccaaca 162  Q
    ||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  10187181 gttcaccatatcattaccgcttattcgcaacactgaaagacaagtgagatgttcccaagttggctcagttttccacataatccctccaacagagccaaca 10187082  T
Q  163 ctcaatttctgtaaactgataggaaaatcatctatgacaaaagattgaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttca 262  Q
     ||| || |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||| || |||    
T  10187081 gtcagttcctgtaaactgctaggcaaatcatctatgacaaaagattgaacatttggtagattatcaatttccatttctttaaggccagtaagatcggtca 10186982  T
Q  263 ttctttcaggtagcgaacgaagcttcccacacttccacactgcaatataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcatt 362  Q
    ||  ||| || || ||| |||||||| |||||||||||| |||||||||||||||||||||||    ||||||||||| ||||||||| || |  |||||    
T  10186981 ttgcttctggcagtgaatgaagcttctcacacttccacaatgcaatataaacaaggtttggagtagccaatccacctgagggaaatgattcaagttcatt 10186882  T
Q  363 acaatcccatattttgatgcttctaagaaacgagagactctt 404  Q
    ||| ||||||||||| |||||||||||||| |||||||||||    
T  10186881 acagtcccatattttaatgcttctaagaaatgagagactctt 10186840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 420
Target Start/End: Complemental strand, 2922109 - 2921695
Alignment:
Q  9 accacagatgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtg 108  Q
    ||||| |||||||||  | |||||||||   ||||| | |||| ||||||| ||||||||| |||||| ||| || |||| |||||||||||||||||||    
T  2922109 accacggatgcatagcatcacaagcgatgctggtagtaatggcaccatcagcgtgttcaccgtatcatcgccgtttattctcaacactgaaagacaagtg 2922010  T
Q  109 agatgttcccaagtttgctcagtat---tccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaag 205  Q
    ||||||| ||||||| ||| |||||   ||||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||     
T  2922009 agatgtttccaagttggcttagtatacttccacataatccctccaacagagccaacagtcagttcctgtaaactgataggcaaatcatctatgacaaaat 2921910  T
Q  206 attgaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgc 305  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |  |||||| ||| |||||||   ||||||||| | |||    
T  2921909 atttaagatttggtagattatcaatttccatttcttgaaggccagttagagtgttcattcctgaaggtagtgaatgaagcttattacacttccatattgc 2921810  T
Q  306 aatataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactcttt 405  Q
    ||||||||||||||||||||   ||||||||| | | | |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  2921809 aatataaacaaggtttggagtaggcaatccacttagtgaaaatgactccaattccttacaatcccatattttgatgcttctaagaaatgagagactcttt 2921710  T
Q  406 tcggatgctctttct 420  Q
    || || |||| ||||    
T  2921709 tccgacgctccttct 2921695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 5968396 - 5968000
Alignment:
Q  9 accacagatgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtg 108  Q
    |||||| ||||||||| | |||||||||   ||||| | |||  |||||||  |||||||| ||||||| |  || |||||||||||||||||| | | |    
T  5968396 accacaaatgcatagtctcacaagcgataccggtagcaatggaaccatcagcttgttcaccgtatcattactgttgattcgcaacactgaaagatagggg 5968297  T
Q  109 agatgttcccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagatt 208  Q
    ||||||||||||||| ||||| | ||||| ||||||||||||||||| |||||| ||| || ||||||||||||||| ||||||||||||||||||||||    
T  5968296 agatgttcccaagttggctcattcttccaaataatccctccaacagaaccaacagtcagttcctgtaaactgataggcaaatcatctatgacaaaagatt 5968197  T
Q  209 gaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaat 308  Q
    ||||||| || ||||||||||||||||||||| |||||||||| |||| | |||||  ||||||||| |||| ||||||  |||||||||||||||||||    
T  5968196 gaagattcggaagattatcaatttccatttcttgaaggccagttagagagctcattgcttcaggtagtgaactaagcttttcacacttccacactgcaat 5968097  T
Q  309 ataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactctttt 406  Q
    |||||||||||||  || | |||||||||||| || |||||||||||  |||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  5968096 ataaacaaggtttatagtgggcaatccacctgtggaaaatgactccagttcattacaat-ccatattttgatgcttttaagaaatgagagactctttt 5968000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 11488884 - 11489273
Alignment:
Q  17 tgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtgagatgttc 116  Q
    |||||||||| |||||||||  |||||| ||| || ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  11488884 tgcatagtgtaacaagcgatgcaggtagcagttgcaccatcagcgtgttcaccatagcattgccattaattcgcaacacagaaagacaagtgagatgttc 11488983  T
Q  117 ccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagattgaagattt 216  Q
    ||||||| ||||||||||||||| ||| ||  | || ||||||||| ||| || | | ||||| ||||| |||||||||||||||||||||||||||||     
T  11488984 ccaagttggctcagtattccacaaaataccctctaccgagccaacagtcagttcccgcaaactcataggcaaatcatctatgacaaaagattgaagattc 11489083  T
Q  217 ggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaatataaacaa 316  Q
    || |||| |||||||||||||||  ||||| |||| | || |||||||  ||| ||||| ||  ||||||||  ||||||||||||| ||| || ||  |    
T  11489084 ggcagatcatcaatttccatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgacacttccacactacaaaatgaatga 11489183  T
Q  317 ggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactctttt 406  Q
    ||||||||| | ||||||  ||| ||| |||||||| ||  |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  11489184 ggtttggagtgtgcaatctgcctagggtaaatgacttcagttcattacaatcccatattttgatgctactaagaaatgagagactctttt 11489273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 407
Target Start/End: Complemental strand, 3872702 - 3872313
Alignment:
Q  9 accacagatgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtg 108  Q
    |||||| ||||||||||| |  || |||  |||||| | |||| ||||||  | ||||||| ||||||| || |||||| |||||||  |||||||||||    
T  3872702 accacaaatgcatagtgtcatgagagatgcaggtagcaatggcaccatcaacgagttcaccgtatcattaccgttaatttgcaacacaaaaagacaagtg 3872603  T
Q  109 agatgttcccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagatt 208  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||  |  ||||||||| |||| ||||||||||                
T  3872602 agttgttcccaattttgctcagtattccacataatccctccaacagagccaacagtcagctcatgtaaactgctaggcaaatcatcta-----------c 3872514  T
Q  209 gaagatttggtagattatcaatttccatttctagaaggccag--taagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgca 306  Q
    |||||||||||||||||| ||||||||||||| |||||| ||  | |||  |||||||  ||| || || |||  ||||||  |||||||||||| ||||    
T  3872513 gaagatttggtagattattaatttccatttcttgaaggctagctttagactgttcattgcttctggcagtgaataaagcttttcacacttccacaatgca 3872414  T
Q  307 atataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactctttt 406  Q
    |||||||||||||||| ||    |||||||||||  |||||||||||||  |||||| | ||||||||||| |||||||||||| | || ||||||||||    
T  3872413 atataaacaaggtttgaagtcgccaatccacctgaaggaaatgactccagttcattatagtcccatattttaatgcttctaagatatgaaagactctttt 3872314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 4132716 - 4132628
Alignment:
Q  130 gtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagattgaagatttgg 218  Q
    |||||||||| || ||||||||||  ||||||||||| || | |||| |||||||||||||||| ||||  ||| ||||| ||||||||    
T  4132716 gtattccacaaaacccctccaacattgccaacactcagttcccgtaagctgataggaaaatcatgtatggaaaacgattgcagatttgg 4132628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 16449366 - 16448969
Alignment:
Q  9 accacagatgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtg 108  Q
    |||||||||||||||||| | |||||||  |||||||  ||||||||||||||| |||||| |||||   |||||||||||||||||||||||||||||     
T  16449366 accacagatgcatagtgtcagaagcgatgcaggtagagatggccccatcagtgtcttcaccgtatcagcaccattaattcgcaacactgaaagacaagtc 16449267  T
Q  109 agatgttcccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagatt 208  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| | | || ||||||||||| ||| |||||||||||||  |||||||    
T  16449266 agatgttcccaagttggctccgtattccacataatcactccaacagagccaacagtaagttcctgtaaactgacaggcaaatcatctatgattaaagatt 16449167  T
Q  209 gaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaat 308  Q
    |||||||||||||||||||||||||||||||| |||||   || |||| |||||||  ||| || || ||| |||||||| |||||| ||||||||||||    
T  16449166 gaagatttggtagattatcaatttccatttcttgaaggttggttagagtgttcattggttctggcagtgaatgaagcttctcacactgccacactgcaat 16449067  T
Q  309 ataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactctttt 406  Q
    |||||  |||||||||| | |||||||||||| ||||||||||| || ||| ||||| |||||||||||||||||||||||||| |||||||| ||||    
T  16449066 ataaatgaggtttggagtgggcaatccacctgtgggaaatgacttcagctcgttacagtcccatattttgatgcttctaagaaatgagagactatttt 16448969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 407
Target Start/End: Complemental strand, 5991104 - 5990706
Alignment:
Q  9 accacagatgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtg 108  Q
    ||||| |||||||||||||||||| ||||||||||| | ||||| |||||| || |||||| |||||   || || ||||||||||||||||||||||||    
T  5991104 accacggatgcatagtgttacaagtgatttaggtagcaatggccgcatcagggttttcaccgtatcagcaccgttgattcgcaacactgaaagacaagtg 5991005  T
Q  109 agatgttcccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagatt 208  Q
    ||||| |||||||||   || ||||||||||||||||||||||||||||| ||| | | ||   |||||||| | || |||||||||||| |||||||||    
T  5991004 agatgctcccaagttgtgtcggtattccacataatccctccaacagagccgacagtaagttcacgtaaactgcttggtaaatcatctatggcaaaagatt 5990905  T
Q  209 gaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaat 308  Q
    ||||||||||||||||||||||||| | |||| |||||||| | |||  |||||||  ||| ||||| ||| |||||||| |||||||||| ||||||||    
T  5990904 gaagatttggtagattatcaatttcaagttcttgaaggccatttagactgttcattgcttctggtagtgaatgaagcttctcacacttccagactgcaat 5990805  T
Q  309 ataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactcttttc 407  Q
    |||||| |||||||||| |   |||| ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  5990804 ataaacgaggtttggagtggctaatctacctgggggaaatgactccagttcattacagtcccatattttgatgcttctaagaaatgagagactcttttc 5990706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 9 - 421
Target Start/End: Original strand, 2361 - 2773
Alignment:
Q  9 accacagatgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtg 108  Q
    |||||||||||||||||| || || |||  |||||| | |||| |||| |  | || ||||||||||   || |||||||||| |||||| |||||| ||    
T  2361 accacagatgcatagtgtcacgagagatgcaggtagcattggcaccatgaacgagtccaccatatcaccacccttaattcgcagcactgacagacaattg 2460  T
Q  109 agatgttcccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagatt 208  Q
    ||| ||||||||||| ||| ||||||||||| ||||  ||||| |||||||||| |||||| | ||||||||| ||| |||||||||||  ||||  |||    
T  2461 agacgttcccaagttggcttagtattccacaaaatcgatccaagagagccaacagtcaattcccgtaaactgaaaggcaaatcatctatatcaaagtatt 2560  T
Q  209 gaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaat 308  Q
    |||||||||||||| ||||||||||||||||  |||| ||||| |||| |||||||  | | ||||| ||||| |||||| |||||| ||||||||||||    
T  2561 gaagatttggtagactatcaatttccatttcatgaagaccagttagagtgttcattgctgctggtagtgaacggagcttctcacactgccacactgcaat 2660  T
Q  309 ataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactcttttcg 408  Q
    ||||   |||||||||| |  ||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||||     
T  2661 ataactgaggtttggagtggccaatccacctgggggaaatgactccaattcattacaataccatattatgatgcttctaagaaatgagagactcttttcc 2760  T
Q  409 gatgctctttctg 421  Q
    || |||| |||||    
T  2761 gacgctccttctg 2773  T

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Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 113 - 404
Target Start/End: Complemental strand, 18390528 - 18390240
Alignment:
Q  113 gttcccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagattgaag 212  Q
    ||||||||||| | ||||||||||||| || ||||||||||||||||| | ||| || | | |||||  |||| ||||||| ||||||||||||||||||    
T  18390528 gttcccaagttggatcagtattccacaaaaaccctccaacagagccaatagtcagttcccgcaaactagtaggcaaatcatttatgacaaaagattgaag 18390429  T
Q  213 atttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaatataa 312  Q
    |||||| |||||||||||||||||| || |||||||||| |||| || |  | |   |||||| ||| ||||||||  ||||||||||| ||||||||||    
T  18390428 atttggaagattatcaatttccattacttgaaggccagttagagtgtccggttt---aggtagtgaatgaagcttctgacacttccacaatgcaatataa 18390332  T
Q  313 acaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactctt 404  Q
    |  |||||||||| |  ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  18390331 atgaggtttggagtggccaatccacctgggggaaatgactccagttcattacaatcccatattttgatgcttctaagaaatgagagactctt 18390240  T

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Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 17314331 - 17313950
Alignment:
Q  16 atgcatagtgttacaagcgatttaggtagaagtggccccatcagtgtgttcaccatatcattgccattaattcgcaacactgaaagacaagtgagatgtt 115  Q
    ||||||||||| |||||||||  |||||| |||||| ||||||| ||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||    
T  17314331 atgcatagtgtaacaagcgatgcaggtagcagtggcaccatcagcgtgttcaccgtattatttccattaattcgcaacactgaaagacaggtgagatgtt 17314232  T
Q  116 cccaagtttgctcagtattccacataatccctccaacagagccaacactcaatttctgtaaactgataggaaaatcatctatgacaaaagattgaagatt 215  Q
    ||||         |||||||  || |||  ||||||||  ||||||| ||| || |   ||||||| ||| ||||||||||||||||| |||||||||||    
T  17314231 ccca---------agtattctgcaaaatagctccaacatggccaacagtcagttcccacaaactgaaaggcaaatcatctatgacaaatgattgaagatt 17314141  T
Q  216 tggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacacttccacactgcaatataaaca 315  Q
    |||||||| |||||||||||||||| |||||  ||| |||    |||||  ||| || || ||| | ||||||  ||| |||||||| |||| |||||      
T  17314140 tggtagatcatcaatttccatttcttgaaggttagttagactaatcattgattctggaagtgaagggagcttctgacatttccacaccgcaaaataaatg 17314041  T
Q  316 aggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgagagactctttt 406  Q
    |||||||||| | |||||||||||||||||||||| || |  ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  17314040 aggtttggagtgtgcaatccacctgggggaaatgaatctagttcattacaatcccatattttgatgcttctaagaaatgagagactatttt 17313950  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 13936165 - 13936120
Alignment:
Q  173 gtaaactgataggaaaatcatctatgacaaaagattgaagatttgg 218  Q
    ||||||||||||| |||||||||||| ||||| |||| ||||||||    
T  13936165 gtaaactgataggcaaatcatctatggcaaaatattgcagatttgg 13936120  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 42506765 - 42506688
Alignment:
Q  310 taaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaa 388  Q
    ||||||||||||  || | ||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||    
T  42506765 taaacaaggtttaaagtgggcaatccacatgggg-aaatgactccaactcactacaatcccatattttgatacttctaa 42506688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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