View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13340_high_8 (Length: 304)
Name: NF13340_high_8
Description: NF13340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13340_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 4997006 - 4997293
Alignment:
| Q |
1 |
ccaaacacagatcataatccttgtaactggagaggcataacctgcgattcgtggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997006 |
ccaaacacagatcataatccttgtaactggagaggcataacctgcgattcgcggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatg |
4997105 |
T |
|
| Q |
101 |
gtgattttccatctaatttctgtcatattccaacactccaaaatctttcacttgctaccaattttcttggtaatgctatttcctcacattccatgctacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997106 |
gtgattttccatctaatttctgtcatattccaacactccaaaatctttcacttgctacgaattttcttggtaatgctatttcctcacattccatgctacc |
4997205 |
T |
|
| Q |
201 |
ctgctcccaccttcatttcttgaacatctccgacaacttattcgttggagccttaccagatttcaactcagaaatctttgaactaaga |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997206 |
ctgctcccaccttcatttcttgaacatctccgacaacttattcgttggagccttaccagatttcaactcagaaatctttgaactaaga |
4997293 |
T |
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