View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13340_low_1 (Length: 841)
Name: NF13340_low_1
Description: NF13340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13340_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 757; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 17 - 825
Target Start/End: Complemental strand, 3017708 - 3016901
Alignment:
| Q |
17 |
agattaaatttccaaacaccaaccttattgtctttctttacacaatctaagattggatagagtaagccgagagatatatcgtcactttcctcgataacac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3017708 |
agattaaatttccaaacaccaaccttattgtctttctttacacaatctaagattggatagagtaagccgagagatatatcgtcactttcctcaataacac |
3017609 |
T |
|
| Q |
117 |
gggccattatggcttccatggacgagaaaacaatttctggatgatattctctgaaagtttcaaacatagttgataagaagcatgttcacacattttgcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3017608 |
gggccattatggcttccatggacgagaaaacaatttctggatgatattctctgaaagtttcaaacatagctgataagaagcatgttcacacattttgcat |
3017509 |
T |
|
| Q |
217 |
tcactacagacaacaacaacaattacaattactgcagcttctagtgatagattcatattaaattcaacccataaacaatgaacaatgatgatatagttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017508 |
tcactacagacaacaacaacaattacaattactgcagcttctagtgatagattcatattaaattcaacccataaacaatgaacaatgatgatatagttca |
3017409 |
T |
|
| Q |
317 |
ttaaaattcataaccatatggaacaccaaccccaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatgtatgactataaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017408 |
ttaaaattcataaccatatggaacaccaaccctaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatgtatgactataaaa |
3017309 |
T |
|
| Q |
417 |
aattgctattcgagaaaatgcccaagtcccacatctaaacattgcttacaaagtttgggtaatcctcaccttacaagtcagttttgtggggtcaagttca |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017308 |
aattgctattcgagaaaatgcccaagtcccacatctaaacattgcttacaaagtttgggtaatcctcaccttacaagtcagttttgtggggtcaagttca |
3017209 |
T |
|
| Q |
517 |
acgtaaaatctaagaaatgcaaagataaaataccgaagctataatgctaaacctgtagtcatgtatgcaacagttcttaccttattgtcttcaagaaaag |
616 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017208 |
acgtaaaatctaagaaatgcaaagataaaataccgaagctataatgctagacctgtagtcatgtatgcaacagttcttaccttattgtcttcaagaaaag |
3017109 |
T |
|
| Q |
617 |
ccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttca |
716 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3017108 |
ccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacataacctgacttttgcaactgtttcaaggattgaaatccttgtttca |
3017009 |
T |
|
| Q |
717 |
taccaacggcttgacatatcatgtagattttcaaaagaagatacaattaatctcaagacctcctgnnnnnnnnntgacaccatataactcaacagacata |
816 |
Q |
| |
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| T |
3017008 |
taccaacggcttgacatatcatgtagattttcaaaagaagatacaattaatctcaagacctcctg-aaagaaaatgacaccatataactcaacagacata |
3016910 |
T |
|
| Q |
817 |
acttgttaa |
825 |
Q |
| |
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||||||||| |
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| T |
3016909 |
acttgttaa |
3016901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 594 - 781
Target Start/End: Complemental strand, 3032867 - 3032680
Alignment:
| Q |
594 |
taccttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacataacctgacttttgcgactgttt |
693 |
Q |
| |
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||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
3032867 |
taccttattgtcttcaagaaatgctgaaacatctccaaaatgagggcatcgcattcaagatccagcattaccacacatgacctgacttttgcaactgttt |
3032768 |
T |
|
| Q |
694 |
caaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaaaagaagatacaattaatctcaagacctcctg |
781 |
Q |
| |
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| T |
3032767 |
cgaggattaaagtcctctttgagtaccatcggcttgacttatcatgtagattttcaaatgaagatacaattaacctaaagacctcctg |
3032680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 3020776 - 3020639
Alignment:
| Q |
79 |
taagccgagagatatatcgtcactttcctcgataacacgggccattatggcttccatggacgagaaaacaatttctggatgatattctctgaaagtttca |
178 |
Q |
| |
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|||||| ||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3020776 |
taagccaagagatatatcgtcactttcctcaaaaacacggatcattatggtttccatggacgagaaaacaatttctggatgatgttctctgaaagtttca |
3020677 |
T |
|
| Q |
179 |
aacatagttgataagaagcatgttcacacattttgcat |
216 |
Q |
| |
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|||| || |||||||||||||||||||| ||||||||| |
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| T |
3020676 |
aacagagctgataagaagcatgttcacatattttgcat |
3020639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 331 - 462
Target Start/End: Complemental strand, 3020545 - 3020414
Alignment:
| Q |
331 |
catatggaacaccaaccccaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatgtatgactataaaaaattgctattcgag |
430 |
Q |
| |
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|||||||||||| | ||| |||| | |||| |||||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
3020545 |
catatggaacactagccctaccatttggtcaaaagcagattcttcagtacaagcatcttatgatgatatcatgcatgactataaaaaattgctattcgag |
3020446 |
T |
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| Q |
431 |
aaaatgcccaagtcccacatctaaacattgct |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
3020445 |
aaaatgcccaagtcccacatctaaacattgct |
3020414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 3033661 - 3033474
Alignment:
| Q |
29 |
caaacaccaaccttattgtctttctttacacaatctaagattggatagagtaagccgagagatatatcgtcactttcctcgataacacgggccattatgg |
128 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||||||||| |||||||| | |||||| || |||||||| || | | || |||||| | |
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| T |
3033661 |
caaacaccaacctcattgtctttctttacactgtctaagattggagagagtaagtcatcagatatttcttcactttcttctagacagaggatcattatag |
3033562 |
T |
|
| Q |
129 |
cttccatggacgagaaaacaatttctggatgatattctctgaaagtttcaaacatagttgataagaagcatgttcacacattttgcat |
216 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||| |||||||||||||||| || || | |||| |||||||||||||||||||| |
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| T |
3033561 |
tttccatggacgagaaaacattatctggatgatgttccctgaaagtttcaaacagagatgcttagaaccatgttcacacattttgcat |
3033474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 3020596 - 3020542
Alignment:
| Q |
235 |
acaattacaattactgcagcttctagtgatagattcatattaaattcaacccata |
289 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
3020596 |
acaattacaattactgcagcttctagtgaaagattcatattaaattcaactcata |
3020542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 767
Target Start/End: Original strand, 48969855 - 48970027
Alignment:
| Q |
595 |
accttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacataacctgacttttgcgactgtttc |
694 |
Q |
| |
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||||||| |||||||| ||| || |||||||||||||||| || |||||||| ||||| |||| ||||||||||||| | ||||| ||||| || ||||| |
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| T |
48969855 |
accttatggtcttcaaaaaatgctgaaacatctccaaaatcagcgcatcacaatcaaggtccaacattaccacacatgatctgacctttgcaacagtttc |
48969954 |
T |
|
| Q |
695 |
aaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaaaagaagatacaattaat |
767 |
Q |
| |
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|||| | |||| | |||||| | |||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
48969955 |
gaggactattctcctattctcatacgatcggcttaacttatcatgtagattttcaaatgaagatacaattaat |
48970027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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