View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13340_low_2 (Length: 553)
Name: NF13340_low_2
Description: NF13340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13340_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 542
Target Start/End: Complemental strand, 37195852 - 37195321
Alignment:
| Q |
15 |
caatagcagctttggtttgggttgcttcatcaagagactagagaatgaaaggggtacttgaattgaacaagtactcgtacttaaagtgaccaaatagcat |
114 |
Q |
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| T |
37195852 |
caatagcagctttggtttgggttgcttcatcaagagagtagagaatgaagggggtacttgaaatgaacaagtactcgtacttaaagtgaccaaatagcat |
37195753 |
T |
|
| Q |
115 |
catgtgacagccaactttagatatatacatctttctctgaccatttccacactatggctgccctttcctttcatctatagtttcatgtggtgtataactt |
214 |
Q |
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| T |
37195752 |
catgtgacagccaactttagatacatacatctttctctgaccatttccacactatggctgccctttcctttcatctatagtttcatgttgtgtataactt |
37195653 |
T |
|
| Q |
215 |
aatttaatgtgaaccacaaaattttgacaattggatccatgatatcgattatttgtgaggaaaatatatattnnnnnnnnnnnnnttat---gtttttgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
37195652 |
aatttaatgtgaaccacaaaattttgacaattggatccatgatatcgattatttgtgaggaaaatatatattaaaaaaacaaaaattatatgttttttgt |
37195553 |
T |
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| Q |
312 |
tacgagctagcttatgatcttgtacttatatttttgttctataatctgtccttattaataaagacaaatacgacatcttttaactgatgcaagtacttga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195552 |
tacgagctagcttatgatcttgtacttatatttttgttctataatctgtccttattaataaagacaaatacgacatcttttaactgatgcaagtacttga |
37195453 |
T |
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| Q |
412 |
gtttagcatgcgggaaggagggagcgggatgttgtggagattcaactttataattagtgcatgagaaatgatagagacaa-nnnnnnnnagcattctctt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37195452 |
gtttagcatgcgggaaggagggagcgggatgttgtggagattcaactttataattagtgcatgagaaatgatagagacaatttttttttagcattctctt |
37195353 |
T |
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| Q |
511 |
tgacattcacttttctaccgtgtgaaattcat |
542 |
Q |
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||||||||||||||||||||| |||||||||| |
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| T |
37195352 |
tgacattcacttttctaccgtatgaaattcat |
37195321 |
T |
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