View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13340_low_4 (Length: 215)
Name: NF13340_low_4
Description: NF13340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13340_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 4650879 - 4651050
Alignment:
| Q |
1 |
ccctatcaaatattgttagaaaatatattaacaatgttgaacaagaaagaattatgtatgtgcaaattaattaacattaacatggatgcaccctaacatt |
100 |
Q |
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| T |
4650879 |
ccctatcaaatattgttagaaaatatattaacaatgttgaacaagaaagaattatgtatgtgcaaattaattaacattaacatggatgcaccctaacatt |
4650978 |
T |
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| Q |
101 |
tctagtccttaaaagtttataaaacacata-nnnnnnngtctccaatgacttgaaattaatatactacaatt |
171 |
Q |
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| T |
4650979 |
tctagtccttaaaagtttataaaacacatattttttttgtctccaatgacttgaaattaatatactacaatt |
4651050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 23679315 - 23679227
Alignment:
| Q |
43 |
aagaaagaattat--gtatgtgcaaattaattaacattaacatggatgcaccctaacatttctagtccttaaaagtttataaaacacat |
129 |
Q |
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| T |
23679315 |
aagaaagaattatatgtatgtgcaaattaaataacactaacatggatacaccctaatatttctggtctttaaaagtttataaaacacat |
23679227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 23679380 - 23679330
Alignment:
| Q |
12 |
attgttagaaaatatattaacaatgttgaacaagaaagaattatgtatgtg |
62 |
Q |
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| T |
23679380 |
attgttagaaaatatattaacaatgttaaacaagaaagaattatatatgtg |
23679330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 4651076 - 4651104
Alignment:
| Q |
187 |
gtaacattaattttatgtagtcattattt |
215 |
Q |
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| T |
4651076 |
gtaacattaattttatgtagtcattattt |
4651104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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