View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13341_high_1 (Length: 585)
Name: NF13341_high_1
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13341_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 30 - 461
Target Start/End: Complemental strand, 14857509 - 14857059
Alignment:
| Q |
30 |
tgtttatgtaaca--attaaaagaggaaaatgatccgagtgattccaaagtaaagtgttgcagcttactgcacaaaagttgtcaagatggatatcattac |
127 |
Q |
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| T |
14857509 |
tgtttatgtaacacaattaaaagaggaaaatgatccgagtgattcctaagtaaagtgttgcagcttactgcgcaaaagttgtcaagatggatatcattac |
14857410 |
T |
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| Q |
128 |
aaatggatctgtcaaggcgctgagaaatg--ggagt--------ctt----------gtgaatgagagtcttgtgattagtccagtgaagaaaatcagaa |
207 |
Q |
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| T |
14857409 |
aaatggatctgtcaaggcgctgagcaatgtaggagttaccatttctttagtatcaaggtgaatgagagtgttgtgattagtccagtgaagaaaatcagaa |
14857310 |
T |
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| Q |
208 |
caagctgcagctatgggagctcttcccccaattttttcatgcgccgcccctaaaatggaattaaaatcaccaaagaaaatccaagagccagcgtgactgc |
307 |
Q |
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| T |
14857309 |
caagctgcagctatgggagctcttcccccaattttttcatgcgcc---cctaaaatggaattaaaatcaccaaagaaaatccaagagccagtgtgactgc |
14857213 |
T |
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| Q |
308 |
ttatcaggtcagtcaaatcagaccatagagatctcctattaacataataagtacgtgcataaatggcatctatgaacaaggtagagccttcagtgacaca |
407 |
Q |
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| T |
14857212 |
ttatcaagtcaatcaaatcagtccatagagatctcctattaacataataagtatgtgcataaatggcatctatgaacaaggtagagctttcagtgacaca |
14857113 |
T |
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| Q |
408 |
tgacaaagcaagacattggtcattgcgaagaagaataatagaagagaattcagg |
461 |
Q |
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| T |
14857112 |
tgacaaagcaagacattggtcattgcgaagaagaataatagaagagaattcagg |
14857059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 493
Target Start/End: Complemental strand, 14857036 - 14857008
Alignment:
| Q |
465 |
ggagaattagcaggtctaacccacggatg |
493 |
Q |
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| T |
14857036 |
ggagaattagcaggtctaacccacggatg |
14857008 |
T |
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