View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13341_high_4 (Length: 468)
Name: NF13341_high_4
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13341_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 49274707 - 49274251
Alignment:
| Q |
1 |
tacaaattatttcaatgatgatggttggtcatttgggtaaacttgctctttctagcacagctattgct----atctctctttgtgctgtctctggcttca |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49274707 |
tacaaattatttcaatgatgatggttggtcatttgggtaaactttctctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttca |
49274608 |
T |
|
| Q |
97 |
gccgttcagcgttcttgcaagtcttcttttgccatattaggcttatctcttaactatgcatgctattgagtttaagagctactgttgtatcatttgcaga |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49274607 |
gccgttcagcgttcttgcaagtcttcttttgccatattaggcttatctcttaactatgcatgctattgattttaagagctactgttgtatcatttgcaga |
49274508 |
T |
|
| Q |
197 |
gtaagcagtcatttgggtccctgcacatgtcatactgtatctctatactatttgaatgcatcagaattataaaaaatctccaaacatgtcttttgctagt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
49274507 |
gtaagcagtcatttgggtccctgcacatgtcatactgtatctctatactatttgaatgcatcagaattataaaaaatctccaaacattttttttgctagt |
49274408 |
T |
|
| Q |
297 |
tagtttaatcatgaatgtgtactatgtttatcagttctccacaagattacaaacagaaaacacattcatagatgttttgaagtttcaatacatttaagga |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49274407 |
tagtttaatcatgaatgtgtactatgtttatcagttctccacaagattacaaacagaaaacacattcgcagatgttttgaagtttcaatacatttaagga |
49274308 |
T |
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| Q |
397 |
ccataatgacaccacctctcacattaagggaccaatagattgtttactcattatttg |
453 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49274307 |
tcataatgacaccatctctcacattaagggaccaataggttgtttactcattatttg |
49274251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 49254869 - 49254965
Alignment:
| Q |
1 |
tacaaattatttcaatgatgatggttggtcatttgggtaaacttgctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
49254869 |
tacaaattatttcaatgatgatggttggtcatttgggtaaactttctctttctagcacagctattgctatctctctctgtgttgtctctggcttcag |
49254965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 49267131 - 49267227
Alignment:
| Q |
1 |
tacaaattatttcaatgatgatggttggtcatttgggtaaacttgctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
97 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
49267131 |
tacaaattatttcaatgataatggttggtcgtttgggtaaacttgctctttctagcacagctattgctatctctctctgtggtgtctctggcttcag |
49267227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 49271537 - 49271633
Alignment:
| Q |
1 |
tacaaattatttcaatgatgatggttggtcatttgggtaaacttgctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||||| |
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| T |
49271537 |
tacaaattatttcaatgatgatggttggtcatttgggtaaacttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcag |
49271633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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