View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13341_high_6 (Length: 414)
Name: NF13341_high_6
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13341_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 71 - 395
Target Start/End: Original strand, 2598097 - 2598422
Alignment:
| Q |
71 |
gtttcttggaagctgatatataggacataatccaactccaagctatacttggaggccatcaccaagtatacttatggggaccaaattcgtgaaaccatca |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2598097 |
gtttcttggaagctgatatataggacataatccaactccaagctatacttggaggccatcaccaagtatatttatggggaccaaattcgtgaaaccatca |
2598196 |
T |
|
| Q |
171 |
ccaaggtttaagattataattaactactgtc-tcgtgttttttcttaataaaaaacaaatattatagaaaaatcaaaggtccaaatgggctaggtcatgt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2598197 |
ccaaggtttaagattataattaactactggcctcgtgttttttcttaatagaaaacaaatattatagaaaaatcaaaggtccagatgggctaggtcatgt |
2598296 |
T |
|
| Q |
270 |
actaaaggatatatcaagaaatatggaatatcttcaatccaaacaccttccccatttaaaatagcatgcttacctaaaaaatgcgctaatttgttgctgt |
369 |
Q |
| |
|
| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2598297 |
agtaaaggatgtatcaagaaatatgaaatatcttcaatccaaacatcttccccatttaaaatagcatgcttacctaaaaaatgcgctaatttgttgctgt |
2598396 |
T |
|
| Q |
370 |
ttctactttctacgggaatgcctata |
395 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
2598397 |
ttctactttctacggcaatgcctata |
2598422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 126 - 325
Target Start/End: Original strand, 2582849 - 2583046
Alignment:
| Q |
126 |
ccatcaccaagtatacttatggggaccaaattcgtgaaaccatcaccaaggtttaagattataattaactactgtctcgtgtttt-ttcttaataaaaaa |
224 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| || ||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
2582849 |
ccatcaccaagtataattatggggaccaaattcgtggaaccatcagcaaggtttaagatt-ta--taattactgtcttgtgtttttttcttaataaaaaa |
2582945 |
T |
|
| Q |
225 |
caaatattatagaaaaatcaaaggtccaaatgggctaggtcatgtactaaaggatatatcaagaaatatggaatatcttcaatccaaacaccttccccat |
324 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582946 |
caaatattatcgaaaaatcaaaggtccaaatgggctaggtcatgtaccaaaggatgtataaagaaatatggaatatcttcaatccaaacaccttccccat |
2583045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 2583772 - 2583836
Alignment:
| Q |
310 |
aaacaccttccccatttaaaatagcatgcttacctaaaaaatgcgctaatttgttgctgtttcta |
374 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||| |||||||| |
|
|
| T |
2583772 |
aaacaccttccccatttaaaatagcatacttagctaaaaaatgggctaattggttgttgtttcta |
2583836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University