View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13341_high_9 (Length: 219)

Name: NF13341_high_9
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13341_high_9
NF13341_high_9
[»] chr1 (5 HSPs)
chr1 (23-206)||(235241-235424)
chr1 (1-206)||(251286-251482)
chr1 (1-196)||(8814242-8814440)
chr1 (1-196)||(246905-247091)
chr1 (123-196)||(231619-231692)
[»] chr6 (13 HSPs)
chr6 (1-73)||(7012987-7013059)
chr6 (103-196)||(7029851-7029944)
chr6 (1-73)||(7029980-7030052)
chr6 (1-73)||(9170969-9171041)
chr6 (3-73)||(212966-213036)
chr6 (103-196)||(7025794-7025887)
chr6 (124-197)||(7041533-7041606)
chr6 (124-196)||(7012858-7012930)
chr6 (124-196)||(7046877-7046949)
chr6 (1-71)||(7025925-7025995)
chr6 (1-59)||(9159387-9159445)
chr6 (103-196)||(9170855-9170948)
chr6 (103-196)||(9159480-9159573)
[»] chr3 (5 HSPs)
chr3 (8-73)||(9494719-9494784)
chr3 (123-196)||(9343883-9343956)
chr3 (123-196)||(9448352-9448425)
chr3 (136-196)||(41985666-41985726)
chr3 (131-196)||(9695629-9695694)
[»] chr5 (2 HSPs)
chr5 (1-73)||(33541810-33541882)
chr5 (1-73)||(18571269-18571341)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 235424 - 235241
Alignment:
Q  23 taaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagatgctgatgattatgatcgtgcaaggattaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  235424 taaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattgatgaagatgctgatgattatgatcgtgcaaggattaac 235325  T
Q  123 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgt 206  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  235324 gtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgt 235241  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 251286 - 251482
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagatgctgatga 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||  | |  ||| ||  ||| | | |||||||    
T  251286 ctttggttggtggtggagatattaaattcttggtggagagcgacagtgatttgttgttagcagatgtttaccagcg-gaggtt--tgatgctcctgatga 251382  T
Q  101 ttatgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattg 200  Q
      || ||     ||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||| |||||||||||||||| |||||||| | |    
T  251383 acat-at-----aaggattaacgtgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtgg 251476  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 8814242 - 8814440
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagatgctgatga 100  Q
    ||||| ||| ||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||  ||| ||| ||| ||||      | ||||    
T  8814242 ctttgcttgctggcggggatattaaattcctagtggagagcaagggtgatttgttgttagcagatgtttacaaccgtgatattgatga------ttatga 8814335  T
Q  101 ttatgatcgtgcaaggatta---------acgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttc 191  Q
    |||||||||||| ||||||          || ||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||     
T  8814336 ttatgatcgtgccaggattggcaggattgacatgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgttt 8814435  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 247091 - 246905
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagat-gctgatg 99  Q
    |||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||  ||||||||| || |||  | || |||| ||| || |||     
T  247091 ctttggttggtggtggagatattaaattcttagtggagagcaagggtgatttgttgttaatagatgtttacgaacataggtttgatgatgatcgcggat- 246993  T
Q  100 attatgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
             ||| ||||||| || ||||||||||||||| || ||||||||| ||| |||||||||| |||||||| |||| |||||| ||||||||    
T  246992 ---------gtgtaaggattgacttgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggg 246905  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 231692 - 231619
Alignment:
Q  123 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    ||||||||||| |||| |||||||| ||||||| |||||||||| ||||||||||||| |||||| ||||||||    
T  231692 gtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggg 231619  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7013059 - 7012987
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 73  Q
    ||||||||||||| ||||| || |||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  7013059 ctttggttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatga 7012987  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 7029944 - 7029851
Alignment:
Q  103 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    ||||||||| ||||||| |  |||||||||||||||| ||||||||||||||| |||||||| | | ||| |||||||| ||||| ||||||||    
T  7029944 atgatcgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggg 7029851  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7030052 - 7029980
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 73  Q
    ||||||||||||||||  || | |||||||||||||||||||| || |||||||||||||| |||||||||||    
T  7030052 ctttggttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgttagcggatgtttatga 7029980  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9171041 - 9170969
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 73  Q
    ||||||||||||||||| | || |||||||||||||||||||| || |||||||||||||| || ||||||||    
T  9171041 ctttggttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgttagcggacgtttatga 9170969  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 212966 - 213036
Alignment:
Q  3 ttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 73  Q
    ||||||| |||||| |  || |||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  212966 ttggttgatggtggaggcatgaaattcttagtggagagcgagggtgatttgttgttagtagatgtttatga 213036  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 7025887 - 7025794
Alignment:
Q  103 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    ||||| ||| ||||||| |  |||||||||||||||| ||||||||||||||| |||||||| | | |||||| ||||| ||||| ||||||||    
T  7025887 atgattgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggg 7025794  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 7041606 - 7041533
Alignment:
Q  124 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggga 197  Q
    ||||||| |||||||| ||||||||||||||| |||||||| | | |||||||||||| ||||| |||||||||    
T  7041606 tgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttggga 7041533  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 7012930 - 7012858
Alignment:
Q  124 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||||  |||| ||||||||    
T  7012930 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggg 7012858  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 7046949 - 7046877
Alignment:
Q  124 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    |||||||||||||||| ||||||||||||||| |||||||  | | ||||||||||| |||||| ||||||||    
T  7046949 tgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggg 7046877  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7025995 - 7025925
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttat 71  Q
    ||||| |||| || ||||| || |||||||||||||||||||| || |||||||||||||| |||||||||    
T  7025995 ctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttgttagcggatgtttat 7025925  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9159387 - 9159445
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtta 59  Q
    ||||||||||||||||| | || |||||||||||||||||||| || ||||||||||||    
T  9159387 ctttggttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgtta 9159445  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 9170948 - 9170855
Alignment:
Q  103 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    |||||| || ||||||| |  |||||||||||||||| ||||||||||||||| |||| ||  | | |||||||||||| ||||| ||||||||    
T  9170948 atgatcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggg 9170855  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 9159480 - 9159573
Alignment:
Q  103 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    |||||| || ||||||| |  ||||||||||||| || ||||||||||||||| |||| ||  | | |||||||||||| ||||| ||||||||    
T  9159480 atgatcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggg 9159573  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 9494719 - 9494784
Alignment:
Q  8 tggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 73  Q
    |||||| ||||| || ||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  9494719 tggtgggggggacatcaaattcttagtcgagagtgacggtgatttgttgttagtagatgtttatga 9494784  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 9343956 - 9343883
Alignment:
Q  123 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    |||||||||||| |||| | ||||||||||||| |||||||  ||| |||||||||||| ||||| ||||||||    
T  9343956 gtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggg 9343883  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 9448425 - 9448352
Alignment:
Q  123 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    |||||||||||| |||| ||||||||||| ||| |||||||  ||| |||||||||||| ||||| ||||||||    
T  9448425 gtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggg 9448352  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 41985726 - 41985666
Alignment:
Q  136 atgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    |||| ||||||||||| ||| | |||||||| | |||||||||||||||||| ||||||||    
T  41985726 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggg 41985666  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 9695629 - 9695694
Alignment:
Q  131 gcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 196  Q
    |||| |||| ||||||||||||||| | |||||| | |||||||||||||| ||||| || |||||    
T  9695629 gcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttggg 9695694  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33541882 - 33541810
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 73  Q
    |||||||||||||||| ||  | |||||||||||||||||| | ||||||||||||||||  |||||||||||    
T  33541882 ctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatga 33541810  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18571341 - 18571269
Alignment:
Q  1 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 73  Q
    ||||||||| ||||||| | || |||||||| ||||||||||| || ||| |||||||||| || ||||||||    
T  18571341 ctttggttgttggtgggaacatgaaattcttggtggagagcgagggcgatctgttgttagctgacgtttatga 18571269  T

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